Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP44Q9H0E7 RNA5SP327-201ENST00000362494 101 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 RNU4-38P-201ENST00000364472 129 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 Y_RNA.547-201ENST00000384654 119 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 SNORD28B-201ENST00000390993 75 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 MIR548O-201ENST00000408583 114 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.27□□□□□ -2.21
USP44Q9H0E7 RNU4-57P-201ENST00000515980 135 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 RNU6-1299P-201ENST00000516316 100 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 AC007751.1-201ENST00000529260 376 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP44Q9H0E7 AC019288.1-201ENST00000557918 224 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 MIR4764-201ENST00000580680 88 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 MIR548AR-201ENST00000582191 57 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 MIR3192-201ENST00000584920 77 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 AC009779.6-201ENST00000603972 165 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 AL022345.2-201ENST00000606307 135 ntBASIC1.27□□□□□ -2.21
USP44Q9H0E7 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.27□□□□□ -2.21
USP44Q9H0E7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.27□□□□□ -2.21
USP44Q9H0E7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP44Q9H0E7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
USP44Q9H0E7 Y_RNA.91-201ENST00000363042 107 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 SNORD45.3-201ENST00000363836 72 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 Y_RNA.200-201ENST00000364018 102 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 RNU1-93P-201ENST00000364704 169 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 SNORA26-201ENST00000391286 122 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 U8.17-201ENST00000391292 132 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.26□□□□□ -2.21
USP44Q9H0E7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.26□□□□□ -2.21
USP44Q9H0E7 RPS29P28-201ENST00000446439 141 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 RNU7-181P-201ENST00000517234 74 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 PRELID3BP2-201ENST00000605362 201 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 RNU2-4P-201ENST00000606190 192 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 AC078938.1-201ENST00000620993 318 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 AC027335.2-201ENST00000624030 375 ntBASIC1.26□□□□□ -2.21
USP44Q9H0E7 MIR411-201ENST00000362239 96 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 Y_RNA.7-201ENST00000362352 102 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 RNU6-103P-201ENST00000363686 107 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 Y_RNA.634-201ENST00000364811 113 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 Y_RNA.432-201ENST00000384087 111 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 SNORD61-201ENST00000384252 73 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 MIR548A2-201ENST00000384956 97 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 AC048334.1-201ENST00000477975 159 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 RNU7-41P-201ENST00000515917 61 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 RNU11-2P-201ENST00000516898 142 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 RNU6-388P-201ENST00000517012 105 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 RNU6-389P-201ENST00000517048 105 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 AC130289.1-201ENST00000577321 73 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 MIR4744-201ENST00000581563 82 ntBASIC1.25□□□□□ -2.21
USP44Q9H0E7 MIR373-201ENST00000362273 69 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 Y_RNA.66-201ENST00000362862 102 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 Y_RNA.83-201ENST00000363005 113 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNU1-124P-201ENST00000363861 145 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 Y_RNA.476-201ENST00000384347 108 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 MIR518F-201ENST00000384973 87 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNU6-918P-201ENST00000391219 106 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNU6-693P-201ENST00000516134 107 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNA5SP153-201ENST00000516498 76 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 RNU6-365P-201ENST00000517113 106 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.24□□□□□ -2.21
USP44Q9H0E7 AC097639.2-201ENST00000603159 172 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 AC108706.1-201ENST00000611053 297 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 AC141273.2-201ENST00000618989 130 ntBASIC1.24□□□□□ -2.21
USP44Q9H0E7 Y_RNA.274-201ENST00000364714 101 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 RNU6-728P-201ENST00000365375 104 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 SNORD24-201ENST00000383884 75 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 Y_RNA.571-201ENST00000384753 98 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 MIR19B1-201ENST00000384829 87 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 MIR222-201ENST00000384992 110 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 RNU6-578P-201ENST00000390980 103 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 RNU2-70P-201ENST00000410718 179 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 RPS23P4-201ENST00000487908 423 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 RNU6-1270P-201ENST00000517128 108 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.23□□□□□ -2.21
USP44Q9H0E7 AC109810.1-201ENST00000534066 224 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 AP000942.4-201ENST00000604811 241 ntBASIC1.23□□□□□ -2.21
USP44Q9H0E7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.23□□□□□ -2.21
USP44Q9H0E7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
USP44Q9H0E7 RNU6-888P-201ENST00000363010 101 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 Y_RNA.191-201ENST00000363972 113 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 RNU6-47P-201ENST00000383866 107 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 MIR570-201ENST00000384917 97 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 RNU6-910P-201ENST00000390844 107 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.22□□□□□ -2.21
USP44Q9H0E7 AC107297.1-201ENST00000459991 176 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.22□□□□□ -2.21
USP44Q9H0E7 SNORD79.1-201ENST00000516069 84 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 RNU6-504P-201ENST00000516568 104 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 RNU6-197P-201ENST00000516680 100 ntBASIC1.22□□□□□ -2.21
USP44Q9H0E7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.22□□□□□ -2.21
USP44Q9H0E7 RNA5SP264-201ENST00000363115 107 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 Y_RNA.121-201ENST00000363309 113 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 SNORD115-28-201ENST00000363931 81 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 SNORD114-22-201ENST00000365423 72 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 Y_RNA.508-201ENST00000384502 114 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 RNU4-70P-201ENST00000384579 139 ntBASIC1.21□□□□□ -2.22
USP44Q9H0E7 Y_RNA.537-201ENST00000384626 109 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 370.4 ms