Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.714-201ENST00000517065 90 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 AC087685.1-201ENST00000587507 141 ntBASIC2.01□□□□□ -2.09
SMARCA1P28370 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SMARCA1P28370 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2□□□□□ -2.09
SMARCA1P28370 RNU6-1084P-201ENST00000362498 107 ntBASIC2□□□□□ -2.09
SMARCA1P28370 SNORD48-201ENST00000364953 64 ntBASIC2□□□□□ -2.09
SMARCA1P28370 RNU4-43P-201ENST00000410628 137 ntBASIC2□□□□□ -2.09
SMARCA1P28370 RNU6-1299P-201ENST00000516316 100 ntBASIC2□□□□□ -2.09
SMARCA1P28370 MIR3618-201ENST00000580330 88 ntBASIC2□□□□□ -2.09
SMARCA1P28370 MIR8074-201ENST00000615081 81 ntBASIC2□□□□□ -2.09
SMARCA1P28370 AC095038.3-201ENST00000634439 195 ntBASIC2□□□□□ -2.09
SMARCA1P28370 WWP1P1-201ENST00000466609 2769 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 Y_RNA.432-201ENST00000384087 111 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 MIR30A-201ENST00000385092 71 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 RNU6-1135P-201ENST00000411083 103 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.99□□□□□ -2.09
SMARCA1P28370 MIR4431-201ENST00000579990 94 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 AC120024.3-201ENST00000603167 156 ntBASIC1.99□□□□□ -2.09
SMARCA1P28370 Y_RNA.4-201ENST00000362333 112 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 Y_RNA.91-201ENST00000363042 107 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 RNU6-414P-201ENST00000363705 104 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 snoU2-30.1-201ENST00000365012 70 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 RNU6-163P-201ENST00000384396 106 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 MIR194-1-201ENST00000384892 85 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
SMARCA1P28370 RPL30P13-201ENST00000418873 348 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 SNRPGP14-201ENST00000435400 219 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 AC093850.1-201ENST00000454121 251 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 MIR3122-201ENST00000577243 73 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 MIR3198-2-201ENST00000577868 80 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.98□□□□□ -2.09
SMARCA1P28370 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SMARCA1P28370 MIR424-201ENST00000362227 98 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AL627390.1-201ENST00000396055 340 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 RNU6-394P-201ENST00000410735 107 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AL161935.2-201ENST00000414627 60 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 PGBD4P5-201ENST00000445958 426 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 CYCTP-201ENST00000504253 315 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AC008834.1-201ENST00000511612 175 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 RNU7-12P-201ENST00000516030 62 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.97□□□□□ -2.09
SMARCA1P28370 AC104465.1-201ENST00000611365 139 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 MIR7111-201ENST00000619751 72 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AL513423.1-201ENST00000621695 132 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 AC027279.3-201ENST00000625055 122 ntBASIC1.97□□□□□ -2.09
SMARCA1P28370 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SMARCA1P28370 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SMARCA1P28370 ICE2P2-201ENST00000483823 2787 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 SNORD14E-201ENST00000364009 85 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNU4-84P-201ENST00000364200 139 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 Y_RNA.634-201ENST00000364811 113 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNU6-643P-201ENST00000384018 107 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 Y_RNA.464-201ENST00000384282 110 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNU6-804P-201ENST00000384286 107 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 MIR660-201ENST00000385235 97 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 AC006461.1-201ENST00000412637 326 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 Y_RNA.666-201ENST00000516187 112 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNA5SP153-201ENST00000516498 76 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNU6-197P-201ENST00000516680 100 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.96□□□□□ -2.1
SMARCA1P28370 AL160236.1-201ENST00000556317 195 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 MIR4662B-201ENST00000579498 81 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 MIR502-201ENST00000606349 86 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.96□□□□□ -2.1
SMARCA1P28370 RNU6-833P-201ENST00000363486 107 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 RNU6-268P-201ENST00000364174 107 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 RNU2-70P-201ENST00000410718 179 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 JTBP1-201ENST00000441314 247 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 SNORA25.15-201ENST00000516487 89 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 RNU6-255P-201ENST00000516957 105 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 AC024614.2-201ENST00000577584 372 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 MIR4778-201ENST00000577635 80 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 SNORA77B-201ENST00000578179 125 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 SNORD3E-202ENST00000627253 216 ntBASIC1.95□□□□□ -2.1
SMARCA1P28370 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.94□□□□□ -2.1
SMARCA1P28370 Y_RNA.272-201ENST00000364696 102 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 Y_RNA.336-201ENST00000365307 109 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 Y_RNA.357-201ENST00000365487 109 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 RNU6-442P-201ENST00000383968 104 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 RNU6-239P-201ENST00000390990 99 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 MIR891A-201ENST00000401237 79 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 MIR1267-201ENST00000408723 78 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 AC004965.1-201ENST00000413033 213 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 AC005840.1-201ENST00000498412 377 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 RNU7-121P-201ENST00000516604 62 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 AC097639.2-201ENST00000603159 172 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 AC006441.5-201ENST00000612680 209 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 AC021753.1-201ENST00000635724 168 ntBASIC1.94□□□□□ -2.1
SMARCA1P28370 Y_RNA.66-201ENST00000362862 102 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 Y_RNA.118-201ENST00000363300 101 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 SNORD61-201ENST00000384252 73 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 RNU6-1053P-201ENST00000515930 101 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 RNU6-365P-201ENST00000517113 106 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.93□□□□□ -2.1
SMARCA1P28370 MIR3144-201ENST00000579460 79 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 MIR378D2-201ENST00000580636 98 ntBASIC1.93□□□□□ -2.1
SMARCA1P28370 RNU6-1123P-201ENST00000362347 106 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 RNU1-17P-201ENST00000363022 152 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 RNU6-1130P-201ENST00000365434 107 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 RNU6-1062P-201ENST00000383908 107 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms