Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SNORD115-38-201ENST00000365037 82 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 RNU6-550P-201ENST00000391057 101 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 AC096949.1-201ENST00000412047 152 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 RNU6-531P-201ENST00000516694 104 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 AC069113.1-201ENST00000517763 267 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 AL445584.3-201ENST00000617173 78 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 AL662814.1-201ENST00000617364 121 ntBASIC-2.16□□□□□ -2.76
CCDC88BA6NC98 RNY4P36-201ENST00000391116 96 ntBASIC-2.17□□□□□ -2.76
CCDC88BA6NC98 MIR889-201ENST00000401280 79 ntBASIC-2.17□□□□□ -2.76
CCDC88BA6NC98 RNU6-983P-201ENST00000516004 103 ntBASIC-2.17□□□□□ -2.76
CCDC88BA6NC98 AC022616.4-201ENST00000522985 181 ntBASIC-2.17□□□□□ -2.76
CCDC88BA6NC98 AC093783.1-201ENST00000612976 329 ntBASIC-2.17□□□□□ -2.76
CCDC88BA6NC98 RNU6-280P-201ENST00000364145 104 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.241-201ENST00000364470 117 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 RNU6-434P-201ENST00000384376 107 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 SNORD70.1-201ENST00000391007 85 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 AL603914.1-201ENST00000401964 204 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 RPL22P17-201ENST00000438729 315 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 AL158053.1-201ENST00000441503 453 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 MTND1P27-201ENST00000451117 902 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 RNU6-1003P-201ENST00000517099 105 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 AL442663.2-201ENST00000554385 511 ntBASIC-2.18□□□□□ -2.76
CCDC88BA6NC98 RNU6-266P-201ENST00000364225 107 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 SNORD114-17-201ENST00000364699 75 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 RNU6-207P-201ENST00000384137 107 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.497-201ENST00000384447 98 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 SNORD73A-201ENST00000386062 65 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.598-201ENST00000410480 95 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 U8.19-201ENST00000459095 133 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 U8.22-201ENST00000459141 133 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 AC131235.4-201ENST00000609288 620 ntBASIC-2.19□□□□□ -2.76
CCDC88BA6NC98 RNU6-224P-201ENST00000384055 107 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU4-55P-201ENST00000410731 137 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU6-1337P-201ENST00000516525 95 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU6-410P-201ENST00000517006 107 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 AC022616.6-201ENST00000520479 119 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 UBL5P4-201ENST00000562584 236 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 YWHAEP3-201ENST00000582767 121 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 MIR548AE1-201ENST00000583292 70 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 AC011603.4-201ENST00000611325 277 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 AC069503.3-201ENST00000618674 145 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU6-236P-201ENST00000363886 106 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU6-973P-201ENST00000364690 107 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RNU6-905P-201ENST00000384434 107 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.547-201ENST00000384654 119 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RPS29P24-201ENST00000486345 171 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 RPL30P10-201ENST00000488148 337 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 AL121757.2-201ENST00000611223 313 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 MIR6502-201ENST00000617296 76 ntBASIC-2.2□□□□□ -2.76
CCDC88BA6NC98 Y_RNA.78-201ENST00000362970 110 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RNU6-1317P-201ENST00000364582 104 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RNU2-9P-201ENST00000410194 145 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RPL30P15-201ENST00000457129 321 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RNU7-134P-201ENST00000458997 64 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RNU5B-6P-201ENST00000516765 68 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 MIR4307-201ENST00000582802 84 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 MIR8084-201ENST00000614105 89 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 AL158209.2-201ENST00000619266 216 ntBASIC-2.21□□□□□ -2.76
CCDC88BA6NC98 RNU4-58P-201ENST00000363192 141 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 RNU6-1125P-201ENST00000363601 107 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 Y_RNA.319-201ENST00000365138 92 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 Y_RNA.346-201ENST00000365385 112 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 RNU6-883P-201ENST00000384597 107 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 RNU6-757P-201ENST00000410334 100 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 RNU7-74P-201ENST00000459104 62 ntBASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-2.22□□□□□ -2.77
CCDC88BA6NC98 SNORD115-35-201ENST00000365122 82 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 Y_RNA.437-201ENST00000384113 113 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 RNU6-767P-201ENST00000384132 107 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 ELOCP4-201ENST00000420090 333 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 RNU2-69P-201ENST00000516061 100 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 RNU7-53P-201ENST00000516705 60 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 SNORA40.17-201ENST00000517256 115 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 AC100767.1-201ENST00000528178 123 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 AC009248.2-201ENST00000619826 254 ntBASIC-2.23□□□□□ -2.77
CCDC88BA6NC98 SNORD115-25-201ENST00000362619 82 ntBASIC-2.24□□□□□ -2.77
CCDC88BA6NC98 RNU5F-3P-201ENST00000363767 117 ntBASIC-2.24□□□□□ -2.77
CCDC88BA6NC98 SNORA20.2-201ENST00000383922 131 ntBASIC-2.24□□□□□ -2.77
CCDC88BA6NC98 MIR548H1-201ENST00000408610 102 ntBASIC-2.24□□□□□ -2.77
CCDC88BA6NC98 SNORD115-34-201ENST00000362441 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-12-201ENST00000362583 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-29-201ENST00000362834 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-9-201ENST00000362912 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-21-201ENST00000362963 81 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-14-201ENST00000363090 81 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-13-201ENST00000363358 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-11-201ENST00000363616 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-5-201ENST00000363633 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-39-201ENST00000363694 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD18.1-201ENST00000363807 70 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-4-201ENST00000363810 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-16-201ENST00000363887 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-6-201ENST00000363942 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-560P-201ENST00000364007 108 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-15-201ENST00000364809 81 ntBASIC-2.26□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 282.7 ms