Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 BTF3P11-201ENST00000426582 477 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 SNRPGP10-201ENST00000432323 225 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 AC015922.2-201ENST00000435593 184 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 U8.19-201ENST00000459095 133 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 TRBVB-201ENST00000477100 408 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 AL133373.1-201ENST00000497098 94 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 CYCTP-201ENST00000504253 315 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 RNU6-327P-201ENST00000516270 127 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 RNU6-1338P-201ENST00000516328 91 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 RNU6-113P-201ENST00000516653 101 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 AC090821.2-201ENST00000523552 176 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 DEFB108E-201ENST00000524692 240 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.11□□□□□ -2.23
TNFRSF4P43489 JPX_2.1-201ENST00000614161 69 ntBASIC1.11□□□□□ -2.23
TNFRSF4P43489 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.11□□□□□ -2.23
TNFRSF4P43489 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.11□□□□□ -2.23
TNFRSF4P43489 MIRLET7C-201ENST00000362160 84 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 Y_RNA.203-201ENST00000364106 102 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 Y_RNA.461-201ENST00000384263 103 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 RNU6-763P-201ENST00000390865 106 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 RNU6-131P-201ENST00000391144 107 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 MIR891A-201ENST00000401237 79 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 SNORA36B-201ENST00000410438 131 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 RNU6-1203P-201ENST00000410703 110 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 RNU6-437P-201ENST00000459408 95 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 SERF1AP1-201ENST00000514575 187 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 SCARNA15.1-201ENST00000516384 125 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 Y_RNA.714-201ENST00000517065 90 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 AC005357.1-201ENST00000588399 301 ntBASIC1.1□□□□□ -2.23
TNFRSF4P43489 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.09□□□□□ -2.23
TNFRSF4P43489 RNU6-1309P-201ENST00000363305 108 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 Y_RNA.176-201ENST00000363815 109 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 RNU6-899P-201ENST00000363947 107 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 SNORA2.2-201ENST00000365473 135 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 Y_RNA.376-201ENST00000365638 108 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 SNORA25-201ENST00000384384 134 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 Y_RNA.574-201ENST00000384766 95 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 MTND2P23-201ENST00000422990 651 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 AC114811.1-201ENST00000507207 168 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 AL022345.2-201ENST00000606307 135 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 BX284668.6-201ENST00000606899 438 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 MIR6767-201ENST00000637302 66 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 U6.104-201ENST00000637979 90 ntBASIC1.09□□□□□ -2.23
TNFRSF4P43489 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
TNFRSF4P43489 RNU6-1272P-201ENST00000362776 107 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 RNU6-1205P-201ENST00000363625 106 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 Y_RNA.162-201ENST00000363683 102 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 Y_RNA.466-201ENST00000384294 113 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 MIR522-201ENST00000385071 87 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 MIR802-201ENST00000390235 94 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
TNFRSF4P43489 MIR1302-6-201ENST00000408466 90 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 RPS29P1-201ENST00000465274 159 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 SNORA31.4-201ENST00000516049 129 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 RNU6-1223P-201ENST00000517124 104 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 SNORA70.22-201ENST00000517160 124 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 AL117187.1-201ENST00000555482 181 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 AL357312.1-201ENST00000603879 298 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 MIR6788-201ENST00000618842 66 ntBASIC1.08□□□□□ -2.24
TNFRSF4P43489 Y_RNA.47-201ENST00000362697 108 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 RNU6-833P-201ENST00000363486 107 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 Y_RNA.149-201ENST00000363558 117 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 RNY1-201ENST00000364228 113 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 Y_RNA.237-201ENST00000364439 102 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 U8.5-201ENST00000364528 136 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 SNORD41-201ENST00000386967 70 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 MIR548F4-201ENST00000408515 105 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 MIR1278-201ENST00000408753 81 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 RPL39P39-201ENST00000455840 151 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 SNORA31.2-201ENST00000516019 134 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 RNU6-947P-201ENST00000516264 106 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 RNU6-917P-201ENST00000516294 104 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 SNORD45.4-201ENST00000516629 73 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 SNORA27.4-201ENST00000516650 95 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 MIR2681-201ENST00000581814 105 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 AC022709.1-201ENST00000615967 87 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 AP001282.2-201ENST00000616149 309 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 MIR8062-201ENST00000621515 85 ntBASIC1.07□□□□□ -2.24
TNFRSF4P43489 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
TNFRSF4P43489 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.06□□□□□ -2.24
TNFRSF4P43489 Y_RNA.44-201ENST00000362676 108 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 RNU6-1209P-201ENST00000363655 107 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 Y_RNA.293-201ENST00000364908 93 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 snoU2-30.1-201ENST00000365012 70 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 Y_RNA.483-201ENST00000384380 101 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.06□□□□□ -2.24
TNFRSF4P43489 Y_RNA.637-201ENST00000459424 114 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 RN7SKP179-201ENST00000516126 217 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 RNA5SP404-201ENST00000517118 132 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 RPL23AP91-201ENST00000569211 455 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 MIR151B-201ENST00000584249 96 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 MIR4762-201ENST00000585261 75 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AL353621.2-201ENST00000605340 133 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AC013791.1-201ENST00000616619 62 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AC027335.2-201ENST00000624030 375 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AC027279.3-201ENST00000625055 122 ntBASIC1.06□□□□□ -2.24
TNFRSF4P43489 AC099654.10-201ENST00000640395 161 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms