Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MTND2P38-201ENST00000522536 667 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 U4.5-201ENST00000617137 123 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 7SK.10-201ENST00000621414 298 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 RNU6-1301P-201ENST00000362724 104 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 RNU6-136P-201ENST00000384663 107 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.552-201ENST00000384665 112 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 Z83846.1-201ENST00000446798 265 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 RNU7-87P-201ENST00000459343 62 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 AC026782.1-201ENST00000512952 449 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 SNORA40.9-201ENST00000515895 93 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 AL357075.2-201ENST00000614906 189 ntBASIC0.33□□□□□ -2.36
SHANK3Q9BYB0 SNORD38C-201ENST00000384381 69 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 AC244098.3-201ENST00000424803 96 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 MTND1P4-201ENST00000435196 415 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 AF235103.2-201ENST00000525753 346 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 MIR5701-3-201ENST00000578890 82 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 MIR5701-1-201ENST00000585138 82 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 AC005972.2-201ENST00000604690 348 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 AC103591.3-201ENST00000608684 209 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 AL355073.2-201ENST00000612106 557 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 MIR5701-2-201ENST00000615634 82 ntBASIC0.32□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.89-201ENST00000363031 102 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-1090P-201ENST00000364065 94 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-879P-201ENST00000364328 108 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.453-201ENST00000384223 109 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 SNORA69.1-201ENST00000390904 137 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-131P-201ENST00000391144 107 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU2-54P-201ENST00000410299 190 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 SNORD12B-201ENST00000410433 91 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-911P-201ENST00000516523 104 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-273P-201ENST00000516937 96 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU2-12P-201ENST00000517216 168 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-1116P-201ENST00000517269 99 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 AC004467.1-201ENST00000615678 330 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 AL591926.4-201ENST00000616895 298 ntBASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SHANK3Q9BYB0 RNU6-396P-201ENST00000365369 105 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.370-201ENST00000365589 108 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 SNORD116-2-201ENST00000384274 95 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RNU6-318P-201ENST00000384283 103 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RNU6-306P-201ENST00000384617 107 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 SNORD116-6-201ENST00000384711 96 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 SNORD105-201ENST00000386910 85 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RNU6-710P-201ENST00000410424 105 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 FCF1P4-201ENST00000448326 183 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 snoU13.11-201ENST00000459219 104 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RPS29P25-201ENST00000481709 171 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AC116353.2-201ENST00000505332 712 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RNU4-49P-201ENST00000516080 140 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 SNORA18.7-201ENST00000516910 131 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AC131055.1-201ENST00000584626 316 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 PISRT1.1-201ENST00000616930 107 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.242-201ENST00000364473 110 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.577-201ENST00000384794 101 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 MT-TN-201ENST00000387400 73 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 RNU6-1050P-201ENST00000410388 107 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AC125232.2-201ENST00000592457 143 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.3□□□□□ -2.36
SHANK3Q9BYB0 AC023934.1-201ENST00000574529 2389 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 SNORA25.3-201ENST00000363205 127 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 RNU6-324P-201ENST00000363957 106 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 MLLT10P1-201ENST00000418346 262 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 MIR2053-201ENST00000459295 91 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 RNU6-1007P-201ENST00000516586 107 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 RNU6-63P-201ENST00000516690 95 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 MIR4790-201ENST00000577799 79 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 AL008636.1-201ENST00000625038 1018 ntBASIC0.29□□□□□ -2.36
SHANK3Q9BYB0 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 MIR1-1-201ENST00000362147 71 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.339-201ENST00000365325 102 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 RNU6-442P-201ENST00000383968 104 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 RNY3P4-201ENST00000384428 101 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 SNORA2B-201ENST00000384583 137 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.537-201ENST00000384626 109 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 MIR522-201ENST00000385071 87 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 MIR516B2-201ENST00000385190 85 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 AL035398.1-201ENST00000430869 322 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 HMGN2P32-201ENST00000444648 269 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 Y_RNA.708-201ENST00000516950 96 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 MIR548AR-201ENST00000582191 57 ntBASIC0.28□□□□□ -2.36
SHANK3Q9BYB0 MIR101-1-201ENST00000362265 75 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 RNU4-24P-201ENST00000364565 139 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 Y_RNA.482-201ENST00000384377 111 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 Y_RNA.594-201ENST00000410373 140 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 MTND4P28-201ENST00000426217 387 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 AC107399.1-201ENST00000451226 265 ntBASIC0.27□□□□□ -2.37
SHANK3Q9BYB0 RNU6-408P-201ENST00000515910 100 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms