Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR3199-1-201ENST00000582434 88 ntBASIC3.87□□□□□ -1.79
COL9A1P20849 RNU6-86P-201ENST00000606534 107 ntBASIC3.87□□□□□ -1.79
COL9A1P20849 AC027279.3-201ENST00000625055 122 ntBASIC3.87□□□□□ -1.79
COL9A1P20849 MIR6841-201ENST00000637129 72 ntBASIC3.87□□□□□ -1.79
COL9A1P20849 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.87□□□□□ -1.79
COL9A1P20849 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
COL9A1P20849 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL9A1P20849 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL9A1P20849 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL9A1P20849 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL9A1P20849 RNA5SP322-201ENST00000363617 119 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 SNORD38.1-201ENST00000363863 68 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 RNU6-1229P-201ENST00000364295 107 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 RNU6-163P-201ENST00000384396 106 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 Y_RNA.545-201ENST00000384652 105 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 AL445685.2-201ENST00000422551 342 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 HMGN2P7-201ENST00000456186 273 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 MIR5680-201ENST00000577577 84 ntBASIC3.86□□□□□ -1.79
COL9A1P20849 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.86□□□□□ -1.79
COL9A1P20849 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
COL9A1P20849 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL9A1P20849 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL9A1P20849 RNU4-82P-201ENST00000362443 140 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 Y_RNA.494-201ENST00000384432 111 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 MIR199A2-201ENST00000385289 110 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 RNU6-1328P-201ENST00000410938 106 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 AC245047.3-201ENST00000429428 127 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 RPS12P2-201ENST00000439728 269 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 AC025554.1-201ENST00000505641 188 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 AC093729.1-201ENST00000513074 128 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.85□□□□□ -1.79
COL9A1P20849 CYP4A43P-201ENST00000568156 121 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 MIR4474-201ENST00000579189 78 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL9A1P20849 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
COL9A1P20849 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.85□□□□□ -1.79
COL9A1P20849 AL442644.1-201ENST00000454390 3105 ntBASIC3.85□□□□□ -1.79
COL9A1P20849 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL9A1P20849 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL9A1P20849 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL9A1P20849 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL9A1P20849 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.84□□□□□ -1.79
COL9A1P20849 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.84□□□□□ -1.79
COL9A1P20849 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.84□□□□□ -1.79
COL9A1P20849 Y_RNA.99-201ENST00000363138 105 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 RNU6-457P-201ENST00000363999 107 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 RNU6-1163P-201ENST00000364516 107 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 SNORA1.2-201ENST00000365189 134 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 MIR561-201ENST00000385216 97 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 RNA5SP508-201ENST00000411327 119 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 RNU7-53P-201ENST00000516705 60 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 DNAJC19P9-201ENST00000555084 351 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 AL591424.2-201ENST00000617023 128 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 AC110079.1-202ENST00000635213 138 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL9A1P20849 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL9A1P20849 AP001486.2-201ENST00000561652 5113 ntBASIC3.84□□□□□ -1.79
COL9A1P20849 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
COL9A1P20849 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
COL9A1P20849 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL9A1P20849 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL9A1P20849 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL9A1P20849 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.83□□□□□ -1.8
COL9A1P20849 MIR422A-201ENST00000362286 90 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 AL603825.1-201ENST00000438481 80 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 RNU7-45P-201ENST00000459460 63 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.83□□□□□ -1.8
COL9A1P20849 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 AC007536.1-201ENST00000533382 349 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.83□□□□□ -1.8
COL9A1P20849 SNORA28-201ENST00000606769 126 ntBASIC3.83□□□□□ -1.8
COL9A1P20849 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL9A1P20849 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
COL9A1P20849 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL9A1P20849 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL9A1P20849 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
COL9A1P20849 RNU6-590P-201ENST00000365039 107 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 MIR519C-201ENST00000385053 87 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
COL9A1P20849 AC015922.2-201ENST00000435593 184 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 snoU13.26-201ENST00000459452 105 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 U7.4-201ENST00000614961 63 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 MIR7154-201ENST00000620673 73 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 SNORD3E-202ENST00000627253 216 ntBASIC3.82□□□□□ -1.8
COL9A1P20849 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
COL9A1P20849 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL9A1P20849 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL9A1P20849 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL9A1P20849 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL9A1P20849 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.81□□□□□ -1.8
COL9A1P20849 Y_RNA.118-201ENST00000363300 101 ntBASIC3.81□□□□□ -1.8
COL9A1P20849 RNU6-524P-201ENST00000384270 107 ntBASIC3.81□□□□□ -1.8
COL9A1P20849 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.81□□□□□ -1.8
COL9A1P20849 RNU7-2P-201ENST00000516096 62 ntBASIC3.81□□□□□ -1.8
COL9A1P20849 RNU6-667P-201ENST00000517186 102 ntBASIC3.81□□□□□ -1.8
COL9A1P20849 MIR7515-201ENST00000637837 67 ntBASIC3.81□□□□□ -1.8
COL9A1P20849 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL9A1P20849 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 179.9 ms