Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
CCDC28AQ8IWP9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
CCDC28AQ8IWP9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP276-201ENST00000362580 94 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.44-201ENST00000362676 108 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.172-201ENST00000363765 102 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 RNU4-13P-201ENST00000364019 141 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.352-201ENST00000365439 102 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.562-201ENST00000384695 113 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR518C-201ENST00000384822 101 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR520A-201ENST00000384862 85 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR562-201ENST00000384894 95 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR520G-201ENST00000385064 90 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR548H3-201ENST00000408771 118 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP511-201ENST00000410487 115 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 AL135790.2-201ENST00000437701 267 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 TRBV12-1-201ENST00000479785 344 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 SNORA70.24-201ENST00000517233 118 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 AC015720.1-201ENST00000565251 277 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR4287-201ENST00000579398 78 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 AC005972.2-201ENST00000604690 348 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR8057-201ENST00000620957 69 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 uc_338.20-201ENST00000621563 178 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 MIR6079-201ENST00000635807 62 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.08□□□□□ -2.08
CCDC28AQ8IWP9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-112P-201ENST00000363599 104 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 SNORA63D-201ENST00000364359 132 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.350-201ENST00000365409 98 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.401-201ENST00000383965 117 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP364-201ENST00000516938 78 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 MIR4635-201ENST00000583759 79 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 AL078604.3-201ENST00000615580 211 ntBASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.275-201ENST00000364726 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP138-201ENST00000365098 114 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-136P-201ENST00000384663 107 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP212-201ENST00000391223 107 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNU2-7P-201ENST00000410794 178 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP100-201ENST00000410903 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP59-201ENST00000410922 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 EEF1A1P41-201ENST00000414667 207 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 AL135786.1-201ENST00000415892 214 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 HSPE1P21-201ENST00000438283 308 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP57-201ENST00000459463 123 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 AC104435.1-201ENST00000483483 166 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 MIR4325-201ENST00000583049 90 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 AP000942.4-201ENST00000604811 241 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 AC068647.2-201ENST00000637380 353 ntBASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC28AQ8IWP9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-1272P-201ENST00000362776 107 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-801P-201ENST00000364087 105 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.217-201ENST00000364214 105 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 SNORA72.4-201ENST00000384174 132 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 SNORA9-201ENST00000384215 133 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-662P-201ENST00000384253 104 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-296P-201ENST00000384608 107 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 MIR17-201ENST00000385012 84 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.618-201ENST00000410949 107 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AL356379.1-201ENST00000414105 126 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-717P-201ENST00000459076 104 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.641-201ENST00000459414 105 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AC091021.1-201ENST00000468051 388 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 SNORA74D-201ENST00000516404 141 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU7-116P-201ENST00000516940 62 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-341P-201ENST00000516973 96 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-1096P-201ENST00000517089 102 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AC091178.2-201ENST00000584401 117 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 AC131280.1-202ENST00000624067 4211 ntBASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-1323P-201ENST00000384025 107 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP109-201ENST00000391010 116 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC009310.1-201ENST00000414414 451 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC245047.3-201ENST00000429428 127 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC105272.1-201ENST00000438604 198 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC104332.1-201ENST00000440471 797 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 RPS4XP11-201ENST00000446897 772 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP481-201ENST00000516814 122 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AL365361.1-201ENST00000566942 3481 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 AC022217.4-201ENST00000604389 163 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms