Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Y_RNA.332-201ENST00000365271 113 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 RNU6-546P-201ENST00000383991 107 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 MIR1179-201ENST00000408703 91 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL9A1P20849 MIR4524B-201ENST00000581569 115 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 MIR4439-201ENST00000583746 80 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL9A1P20849 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL9A1P20849 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.14□□□□□ -1.75
COL9A1P20849 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.13□□□□□ -1.75
COL9A1P20849 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.13□□□□□ -1.75
COL9A1P20849 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL9A1P20849 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.13□□□□□ -1.75
COL9A1P20849 RNU1-72P-201ENST00000362976 153 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 SNORA48.8-201ENST00000391324 134 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 SNORA3.3-201ENST00000408712 125 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 Y_RNA.659-201ENST00000515994 113 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.13□□□□□ -1.75
COL9A1P20849 MIR5684-201ENST00000585074 65 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 HSPE1P19-201ENST00000603327 295 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 MIR6868-201ENST00000611215 58 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 MIR7843-201ENST00000622274 79 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 AC006160.2-201ENST00000637708 154 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 AC091304.10-201ENST00000641554 121 ntBASIC4.13□□□□□ -1.75
COL9A1P20849 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL9A1P20849 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL9A1P20849 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL9A1P20849 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.12□□□□□ -1.75
COL9A1P20849 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.12□□□□□ -1.75
COL9A1P20849 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL9A1P20849 SNORA1B-201ENST00000362535 133 ntBASIC4.12□□□□□ -1.75
COL9A1P20849 AC005326.1-201ENST00000429197 123 ntBASIC4.12□□□□□ -1.75
COL9A1P20849 SNRPGP3-201ENST00000469405 227 ntBASIC4.12□□□□□ -1.75
COL9A1P20849 RPL23AP63-201ENST00000498752 471 ntBASIC4.12□□□□□ -1.75
COL9A1P20849 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.12□□□□□ -1.75
COL9A1P20849 RNU1-142P-201ENST00000516682 145 ntBASIC4.12□□□□□ -1.75
COL9A1P20849 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL9A1P20849 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.12□□□□□ -1.75
COL9A1P20849 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL9A1P20849 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.12□□□□□ -1.75
COL9A1P20849 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL9A1P20849 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL9A1P20849 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL9A1P20849 SNORD68-201ENST00000363214 84 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 RNU6-679P-201ENST00000391003 106 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 RNA5SP252-201ENST00000391131 119 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 RNU2-40P-201ENST00000410833 196 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 AL512326.2-201ENST00000426359 151 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC4.11□□□□□ -1.75
COL9A1P20849 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.11□□□□□ -1.75
COL9A1P20849 AL360157.1-201ENST00000565962 87 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 AC096720.1-201ENST00000604441 183 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 AC006111.3-201ENST00000622137 383 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 AC095038.3-201ENST00000634439 195 ntBASIC4.11□□□□□ -1.75
COL9A1P20849 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL9A1P20849 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.11□□□□□ -1.75
COL9A1P20849 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.11□□□□□ -1.75
COL9A1P20849 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
COL9A1P20849 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
COL9A1P20849 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL9A1P20849 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL9A1P20849 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 RNU6-743P-201ENST00000364151 106 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 RNU6-652P-201ENST00000365488 107 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 RNU6-1201P-201ENST00000384227 107 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 Y_RNA.607-201ENST00000410597 98 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 RNU4-69P-201ENST00000410677 143 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 Y_RNA.611-201ENST00000410682 108 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.1□□□□□ -1.75
COL9A1P20849 AL353813.1-201ENST00000440700 253 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 UBL5P3-201ENST00000475112 231 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 MIR4276-201ENST00000584832 70 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 AC002984.1-201ENST00000591692 448 ntBASIC4.1□□□□□ -1.75
COL9A1P20849 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL9A1P20849 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL9A1P20849 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
COL9A1P20849 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL9A1P20849 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.75
COL9A1P20849 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
COL9A1P20849 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
COL9A1P20849 SNORA7.5-201ENST00000410672 110 ntBASIC4.09□□□□□ -1.75
COL9A1P20849 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC4.09□□□□□ -1.75
COL9A1P20849 PHBP14-201ENST00000512887 367 ntBASIC4.09□□□□□ -1.75
COL9A1P20849 RN7SKP46-201ENST00000515942 234 ntBASIC4.09□□□□□ -1.75
COL9A1P20849 AL513534.2-201ENST00000603836 250 ntBASIC4.09□□□□□ -1.75
COL9A1P20849 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.09□□□□□ -1.75
COL9A1P20849 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL9A1P20849 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL9A1P20849 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL9A1P20849 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.08□□□□□ -1.76
COL9A1P20849 Y_RNA.4-201ENST00000362333 112 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 SNORD38C-201ENST00000384381 69 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 RNA5SP467-201ENST00000391274 118 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.08□□□□□ -1.76
COL9A1P20849 RNA5SP103-201ENST00000459503 118 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms