Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL022345.2-201ENST00000606307 135 ntBASIC1.28□□□□□ -2.2
VMP1Q96GC9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VMP1Q96GC9 AC091812.1-201ENST00000432235 1948 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 RNU1-22P-201ENST00000363334 158 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 Y_RNA.338-201ENST00000365320 114 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 RNU6-505P-201ENST00000384427 107 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
VMP1Q96GC9 SNORA12.1-201ENST00000390873 148 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 RNU1-139P-201ENST00000391307 165 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VMP1Q96GC9 DYNLT3P2-201ENST00000442517 295 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 STAG3L5P-204ENST00000443759 179 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 OR2A41P-201ENST00000473586 105 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.27□□□□□ -2.21
VMP1Q96GC9 RNU6-718P-201ENST00000516166 105 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 RPL21P9-201ENST00000556149 474 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 AC073413.2-201ENST00000604332 360 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 AC093913.1-201ENST00000614178 329 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 MIR6128-201ENST00000615528 109 ntBASIC1.27□□□□□ -2.21
VMP1Q96GC9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VMP1Q96GC9 MIR1277-201ENST00000408536 78 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 MTCO3P19-201ENST00000415864 321 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 USP9YP30-201ENST00000430729 455 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 MTND1P17-201ENST00000448961 204 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.26□□□□□ -2.21
VMP1Q96GC9 HSPE1P13-201ENST00000451143 297 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC011352.1-201ENST00000512300 793 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 SNORA70.22-201ENST00000517160 124 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 AL121579.1-201ENST00000555129 305 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC068338.1-201ENST00000565567 176 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC090617.3-201ENST00000573670 475 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC027335.2-201ENST00000624030 375 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 MIR6079-201ENST00000635807 62 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 AC073869.6-201ENST00000640656 341 ntBASIC1.26□□□□□ -2.21
VMP1Q96GC9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VMP1Q96GC9 Y_RNA.106-201ENST00000363189 100 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 RNU6-1059P-201ENST00000363752 98 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 Y_RNA.301-201ENST00000364990 103 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 MIR222-201ENST00000384992 110 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 AC092473.1-201ENST00000441098 221 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 AC046134.1-201ENST00000514454 666 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 RNU4-49P-201ENST00000516080 140 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 SNORD116-28-201ENST00000516123 91 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 RNU6-922P-201ENST00000516753 99 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 RNU7-172P-201ENST00000517125 64 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 AC093023.1-201ENST00000547375 507 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 MIR3684-201ENST00000579779 74 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 AL157834.3-201ENST00000615543 103 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 AL133216.2-202ENST00000634512 349 ntBASIC1.25□□□□□ -2.21
VMP1Q96GC9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
VMP1Q96GC9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
VMP1Q96GC9 AL391987.6-201ENST00000305671 199 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 MIR562-201ENST00000384894 95 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AL139396.1-201ENST00000421137 167 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.24□□□□□ -2.21
VMP1Q96GC9 RAB28P5-201ENST00000427490 651 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.24□□□□□ -2.21
VMP1Q96GC9 RNU1-123P-201ENST00000458950 160 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 RPS23P4-201ENST00000487908 423 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.24□□□□□ -2.21
VMP1Q96GC9 MIR4778-201ENST00000577635 80 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 MIR4790-201ENST00000577799 79 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AC018638.8-201ENST00000588755 281 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AC002553.4-201ENST00000616896 331 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 AC012676.2-201ENST00000619258 186 ntBASIC1.24□□□□□ -2.21
VMP1Q96GC9 RNU6-222P-201ENST00000362438 107 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 Y_RNA.48-201ENST00000362710 103 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 RNU6-199P-201ENST00000362954 107 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 RNU1-124P-201ENST00000363861 145 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 RNU6-842P-201ENST00000384269 107 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 MTCYBP4-201ENST00000401524 249 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.23□□□□□ -2.21
VMP1Q96GC9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.23□□□□□ -2.21
VMP1Q96GC9 SNORD5.1-201ENST00000458800 75 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 AC097462.1-201ENST00000514125 324 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 RNA5SP168-201ENST00000516642 112 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 AC007014.2-201ENST00000615581 479 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 AL353770.2-201ENST00000620024 78 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.23□□□□□ -2.21
VMP1Q96GC9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.23□□□□□ -2.21
VMP1Q96GC9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
VMP1Q96GC9 Y_RNA.86-201ENST00000363020 111 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 SNORA20B-201ENST00000384220 132 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.22□□□□□ -2.21
VMP1Q96GC9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.22□□□□□ -2.21
VMP1Q96GC9 RNU6-329P-201ENST00000459618 107 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 MTND5P5-201ENST00000503764 376 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 AC105758.1-201ENST00000506038 399 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 RNU6-1053P-201ENST00000515930 101 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 SNORA31.4-201ENST00000516049 129 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 RNU7-28P-201ENST00000516759 62 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 CBX3P8-201ENST00000532412 525 ntBASIC1.22□□□□□ -2.21
VMP1Q96GC9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.22□□□□□ -2.21
VMP1Q96GC9 AL359821.1-201ENST00000605519 182 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms