Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC39Q9UFE4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RNU6-1336P-201ENST00000383886 109 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RNU6-217P-201ENST00000384164 104 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 SNORA20B-201ENST00000384220 132 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 MIR183-201ENST00000384958 110 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RNA5SP252-201ENST00000391131 119 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RNU6-383P-201ENST00000410864 94 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC010099.1-201ENST00000455434 375 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 snoU13.28-201ENST00000459235 104 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AP004217.1-201ENST00000480579 346 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC007536.1-201ENST00000533382 349 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC009163.5-201ENST00000575421 637 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 MIR2682-201ENST00000580305 110 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC012468.1-201ENST00000604888 430 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC073308.1-201ENST00000623696 305 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 U6.105-201ENST00000637379 88 ntBASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC39Q9UFE4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 Z82209.1-201ENST00000422141 2135 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 Y_RNA.114-201ENST00000363265 113 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 SNORA14A-201ENST00000364773 135 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 SNORD87-201ENST00000364849 89 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 RNU6-1280P-201ENST00000365211 107 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 RNY3P5-201ENST00000384127 102 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 SNORA48.5-201ENST00000391143 135 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 AC090897.2-201ENST00000581715 130 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 uc_338.25-201ENST00000613756 156 ntBASIC3.59□□□□□ -1.83
CCDC39Q9UFE4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
CCDC39Q9UFE4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC39Q9UFE4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
CCDC39Q9UFE4 AC138915.1-201ENST00000565427 1685 ntBASIC3.59□□□□□ -1.84
CCDC39Q9UFE4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 SNORD45.3-201ENST00000363836 72 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 SNORD58C-201ENST00000365223 64 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 RNU6-622P-201ENST00000384272 103 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 MIR887-201ENST00000401258 79 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 AL031121.1-201ENST00000406553 254 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 RNA5SP390-201ENST00000410191 113 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.622-201ENST00000411091 108 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 AC245047.4-201ENST00000433189 144 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 RPS12P18-201ENST00000442381 270 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 RNU2-60P-201ENST00000517290 128 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 MIR378D2-201ENST00000580636 98 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 AL451007.1-201ENST00000595491 289 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 uc_338.28-201ENST00000612082 187 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 AL121890.5-201ENST00000620848 304 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 SNORD98-201ENST00000636377 67 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 FAM35CP-201ENST00000554755 2470 ntBASIC3.58□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.120-201ENST00000363304 110 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.361-201ENST00000365515 120 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 MIR7-3-201ENST00000384898 110 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 AC004866.1-201ENST00000411748 78 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 MLLT10P1-201ENST00000418346 262 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 AC006028.1-201ENST00000438379 402 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 AC006483.1-201ENST00000487308 313 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 MIR7975-201ENST00000619350 68 ntBASIC3.57□□□□□ -1.84
CCDC39Q9UFE4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 RNU6-198P-201ENST00000384258 104 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 RNU6-880P-201ENST00000384526 107 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 MIR548A1-201ENST00000385041 97 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 MIR181B1-201ENST00000385240 110 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 SNORA12.1-201ENST00000390873 148 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 CBX3P9-201ENST00000402326 552 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 AC012308.1-201ENST00000451232 178 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 SNRPGP8-201ENST00000454064 226 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 RNU6-581P-201ENST00000516214 105 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 RNU6-344P-201ENST00000516635 111 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 SNORD11B-201ENST00000607707 90 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 AC106754.2-201ENST00000623006 233 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 MIR6733-201ENST00000635723 61 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 U6.115-201ENST00000636045 103 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 AC068205.3-201ENST00000636385 468 ntBASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC39Q9UFE4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 244.1 ms