Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USP9YP29-201ENST00000445112 563 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU6-221P-201ENST00000459541 99 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC060788.1-201ENST00000521318 469 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 MRPS36P4-201ENST00000534436 298 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC004584.2-201ENST00000570407 410 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 CPDP1-201ENST00000579660 283 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AC005562.2-201ENST00000618264 111 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 Y_RNA.1-201ENST00000352915 104 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU6-439P-201ENST00000384188 106 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 SNORA36A-201ENST00000384221 132 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1065P-201ENST00000384513 106 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNY3P9-201ENST00000384727 106 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 MIR329-1-201ENST00000385028 80 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNA5SP299-201ENST00000391203 116 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 TIMM9P3-201ENST00000428659 274 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 CETN4P-201ENST00000432407 469 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RN7SKP298-201ENST00000515950 94 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 SUMO2P16-201ENST00000519475 264 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 SNORA67.2-201ENST00000384300 149 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 RN7SKP142-201ENST00000411236 328 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 USP9YP14-201ENST00000430663 563 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AL031667.1-201ENST00000440222 725 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AL359672.1-201ENST00000442302 409 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AL353572.1-201ENST00000442490 417 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 HMGN1P12-201ENST00000499125 195 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 UBL5P1-201ENST00000507979 193 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 RNU6-430P-201ENST00000517078 107 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 MIR5692C1-201ENST00000585309 91 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AC004492.1-201ENST00000607036 742 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AL357078.3-201ENST00000607528 618 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AL133215.3-201ENST00000609801 448 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AC009509.4-201ENST00000619202 509 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AC073534.2-201ENST00000620377 381 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AC006504.8-201ENST00000621046 635 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 uc_338.22-201ENST00000622722 187 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 AC124864.2-201ENST00000624736 186 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 snoZ196.1-201ENST00000625269 89 ntBASIC0.71□□□□□ -2.3
SHANK3Q9BYB0 RNU5F-3P-201ENST00000363767 117 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 RNU6-280P-201ENST00000364145 104 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 TOMM22P2-201ENST00000430735 237 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC004386.2-201ENST00000441858 148 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 RNA5SP401-201ENST00000515920 127 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 SNORA19.2-201ENST00000516013 114 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC007834.2-201ENST00000536310 343 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC100830.2-201ENST00000581636 240 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC119751.7-201ENST00000600494 245 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC078883.4-201ENST00000623218 367 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 AC068137.4-201ENST00000638485 296 ntBASIC0.7□□□□□ -2.3
SHANK3Q9BYB0 RNU6-1042P-201ENST00000384204 107 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 SNORA25-201ENST00000384384 134 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 RNA5SP323-201ENST00000391094 133 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL606489.2-201ENST00000433886 234 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 MTCO3P8-201ENST00000453691 755 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.695-201ENST00000516715 107 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 RN7SKP88-201ENST00000516847 250 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC104576.1-201ENST00000524225 88 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC104383.1-201ENST00000530297 370 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 LRRC34P1-201ENST00000542742 915 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC092747.3-201ENST00000603769 301 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 7SK.8-201ENST00000612110 250 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 7SK.11-201ENST00000615477 250 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 7SK.13-201ENST00000622040 250 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC027335.2-201ENST00000624030 375 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.77-201ENST00000362962 107 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.287-201ENST00000364853 94 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 MIR549A-201ENST00000385268 96 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 EIF4E2P1-201ENST00000393781 255 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 MRPL35P1-201ENST00000404272 572 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL663109.1-201ENST00000411498 844 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL358934.1-201ENST00000432346 324 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC016717.1-201ENST00000448918 286 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 RPL39P5-202ENST00000512505 151 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 CYP3A52P-201ENST00000563326 91 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 MIR3664-201ENST00000579074 99 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL513534.2-201ENST00000603836 250 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 AL359075.3-201ENST00000613288 217 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.69□□□□□ -2.3
SHANK3Q9BYB0 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 MIR409-201ENST00000362237 79 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 RNU6-348P-201ENST00000384386 107 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms