Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RPL23AP63-201ENST00000498752 471 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC022493.2-201ENST00000506122 481 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.62□□□□□ -2.15
CDX1P47902 AC091144.1-201ENST00000519573 138 ntBASIC1.62□□□□□ -2.15
CDX1P47902 FRG2DP-202ENST00000566967 323 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC104984.5-201ENST00000586878 94 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC125232.2-201ENST00000592457 143 ntBASIC1.62□□□□□ -2.15
CDX1P47902 MIR8074-201ENST00000615081 81 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC133104.2-201ENST00000615272 193 ntBASIC1.62□□□□□ -2.15
CDX1P47902 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.62□□□□□ -2.15
CDX1P47902 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CDX1P47902 Y_RNA.387-201ENST00000383918 102 ntBASIC1.61□□□□□ -2.15
CDX1P47902 SNORA67.3-201ENST00000384366 140 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNU6-1297P-201ENST00000384415 104 ntBASIC1.61□□□□□ -2.15
CDX1P47902 MIR625-201ENST00000385047 85 ntBASIC1.61□□□□□ -2.15
CDX1P47902 SNORA75.6-201ENST00000391318 127 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.61□□□□□ -2.15
CDX1P47902 AC093019.1-201ENST00000443135 252 ntBASIC1.61□□□□□ -2.15
CDX1P47902 U8.22-201ENST00000459141 133 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNU6-120P-201ENST00000516077 103 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNU1-142P-201ENST00000516682 145 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNA5SP481-201ENST00000516814 122 ntBASIC1.61□□□□□ -2.15
CDX1P47902 RNA5SP437-201ENST00000517249 129 ntBASIC1.61□□□□□ -2.15
CDX1P47902 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
CDX1P47902 AC104260.1-201ENST00000616660 539 ntBASIC1.61□□□□□ -2.15
CDX1P47902 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.61□□□□□ -2.15
CDX1P47902 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CDX1P47902 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
CDX1P47902 SNORA33-201ENST00000363664 130 ntBASIC1.6□□□□□ -2.15
CDX1P47902 Y_RNA.259-201ENST00000364619 101 ntBASIC1.6□□□□□ -2.15
CDX1P47902 RNU6-1145P-201ENST00000384246 107 ntBASIC1.6□□□□□ -2.15
CDX1P47902 Y_RNA.498-201ENST00000384460 102 ntBASIC1.6□□□□□ -2.15
CDX1P47902 Y_RNA.577-201ENST00000384794 101 ntBASIC1.6□□□□□ -2.15
CDX1P47902 MIR504-201ENST00000385065 83 ntBASIC1.6□□□□□ -2.15
CDX1P47902 RNU6-360P-201ENST00000390944 104 ntBASIC1.6□□□□□ -2.15
CDX1P47902 AL023284.1-201ENST00000403956 276 ntBASIC1.6□□□□□ -2.15
CDX1P47902 RNU6-1156P-201ENST00000410365 100 ntBASIC1.6□□□□□ -2.15
CDX1P47902 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.6□□□□□ -2.15
CDX1P47902 HSPE1P21-201ENST00000438283 308 ntBASIC1.6□□□□□ -2.15
CDX1P47902 AC073910.1-201ENST00000445047 438 ntBASIC1.6□□□□□ -2.15
CDX1P47902 PCNPP5-201ENST00000452246 481 ntBASIC1.6□□□□□ -2.15
CDX1P47902 HMGN2P23-201ENST00000456759 269 ntBASIC1.6□□□□□ -2.15
CDX1P47902 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CDX1P47902 AC025465.3-201ENST00000510570 311 ntBASIC1.6□□□□□ -2.15
CDX1P47902 AC008834.1-201ENST00000511612 175 ntBASIC1.6□□□□□ -2.15
CDX1P47902 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.6□□□□□ -2.15
CDX1P47902 MTND4LP32-201ENST00000636111 270 ntBASIC1.6□□□□□ -2.15
CDX1P47902 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.6□□□□□ -2.15
CDX1P47902 MIR1302-1-201ENST00000637932 143 ntBASIC1.6□□□□□ -2.15
CDX1P47902 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.6□□□□□ -2.15
CDX1P47902 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
CDX1P47902 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
CDX1P47902 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
CDX1P47902 RNA5SP361-201ENST00000362686 118 ntBASIC1.59□□□□□ -2.15
CDX1P47902 SNORA63D-201ENST00000364359 132 ntBASIC1.59□□□□□ -2.15
CDX1P47902 Y_RNA.303-201ENST00000364998 94 ntBASIC1.59□□□□□ -2.15
CDX1P47902 RNU6-890P-201ENST00000384121 107 ntBASIC1.59□□□□□ -2.15
CDX1P47902 SNORA69.1-201ENST00000390904 137 ntBASIC1.59□□□□□ -2.15
CDX1P47902 MTCYBP4-201ENST00000401524 249 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC019129.1-201ENST00000403786 261 ntBASIC1.59□□□□□ -2.15
CDX1P47902 RNU6-1186P-201ENST00000410429 97 ntBASIC1.59□□□□□ -2.15
CDX1P47902 RPS20P15-201ENST00000412792 311 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.59□□□□□ -2.15
CDX1P47902 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.59□□□□□ -2.15
CDX1P47902 TOMM22P2-201ENST00000430735 237 ntBASIC1.59□□□□□ -2.15
CDX1P47902 FTH1P12-201ENST00000432137 551 ntBASIC1.59□□□□□ -2.15
CDX1P47902 MTCO3P10-201ENST00000455912 772 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC091951.2-201ENST00000500762 203 ntBASIC1.59□□□□□ -2.15
CDX1P47902 RNU6-470P-201ENST00000515954 104 ntBASIC1.59□□□□□ -2.15
CDX1P47902 RN7SKP49-201ENST00000516675 260 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC027419.1-201ENST00000522976 328 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC024995.1-201ENST00000523014 93 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AL137100.2-201ENST00000555786 315 ntBASIC1.59□□□□□ -2.15
CDX1P47902 SUB1P3-201ENST00000564581 315 ntBASIC1.59□□□□□ -2.15
CDX1P47902 MIR3198-2-201ENST00000577868 80 ntBASIC1.59□□□□□ -2.15
CDX1P47902 MIR548S-201ENST00000581352 82 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AL359075.3-201ENST00000613288 217 ntBASIC1.59□□□□□ -2.15
CDX1P47902 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.59□□□□□ -2.15
CDX1P47902 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.59□□□□□ -2.15
CDX1P47902 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CDX1P47902 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CDX1P47902 MIR1267-201ENST00000408723 78 ntBASIC1.58□□□□□ -2.16
CDX1P47902 COX6CP10-201ENST00000416832 224 ntBASIC1.58□□□□□ -2.16
CDX1P47902 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.58□□□□□ -2.16
CDX1P47902 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX1P47902 AL163195.1-201ENST00000496941 348 ntBASIC1.58□□□□□ -2.16
CDX1P47902 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.58□□□□□ -2.16
CDX1P47902 MIR2355-201ENST00000517199 87 ntBASIC1.58□□□□□ -2.16
CDX1P47902 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
CDX1P47902 AC022432.1-201ENST00000595739 310 ntBASIC1.58□□□□□ -2.16
CDX1P47902 MIR6715A-201ENST00000615929 79 ntBASIC1.58□□□□□ -2.16
CDX1P47902 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.58□□□□□ -2.16
CDX1P47902 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
CDX1P47902 MIR424-201ENST00000362227 98 ntBASIC1.57□□□□□ -2.16
CDX1P47902 RNU6-1009P-201ENST00000390996 107 ntBASIC1.57□□□□□ -2.16
CDX1P47902 Y_RNA.605-201ENST00000410577 105 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.57□□□□□ -2.16
CDX1P47902 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.57□□□□□ -2.16
CDX1P47902 MTND5P20-201ENST00000448677 143 ntBASIC1.57□□□□□ -2.16
CDX1P47902 snoU13.9-201ENST00000458927 103 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 231.8 ms