Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC073464.1-201ENST00000429823 534 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 MTCO2P18-201ENST00000457151 658 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 RPL39P28-201ENST00000465655 155 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 RPS26P45-201ENST00000471748 340 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 HMGN2P9-201ENST00000476875 229 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 BET1P1-201ENST00000482276 359 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1041P-201ENST00000516254 102 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 RNU1-142P-201ENST00000516682 145 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 SCOCP1-201ENST00000554676 349 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 MZT1P2-201ENST00000604387 248 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 MIR8076-201ENST00000611401 83 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 AC103705.1-201ENST00000619013 241 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 MIR302D-201ENST00000362275 68 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-137P-201ENST00000363680 108 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-877P-201ENST00000383868 107 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC009237.7-201ENST00000447357 229 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 C1DP4-201ENST00000455429 424 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-261P-201ENST00000459506 102 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 SNORD116-28-201ENST00000516123 91 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNA5SP404-201ENST00000517118 132 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNA5SP437-201ENST00000517249 129 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-323P-201ENST00000521915 107 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 Z99497.2-201ENST00000603634 310 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 Z94722.1-201ENST00000604328 474 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU5B-2P-201ENST00000363036 113 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 SNORD114-15-201ENST00000364687 72 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-933P-201ENST00000384424 107 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-541P-201ENST00000384709 110 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 MTCYBP8-201ENST00000422855 651 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 NFU1P2-201ENST00000448700 469 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 NDUFB4P10-201ENST00000452541 359 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 Y_RNA.654-201ENST00000497848 106 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-344P-201ENST00000516635 111 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6-612P-201ENST00000516909 102 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 CENPUP1-201ENST00000526649 1202 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 MTND1P35-201ENST00000526739 508 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC026371.1-201ENST00000551867 419 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AL442163.3-201ENST00000554110 156 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 MIR4709-201ENST00000577272 72 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AL162424.1-201ENST00000602325 221 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AP000907.4-201ENST00000604143 237 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC017083.3-201ENST00000609955 700 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC068792.1-201ENST00000621354 417 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AC099654.5-201ENST00000636479 350 ntBASIC0.75□□□□□ -2.29
SHANK3Q9BYB0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 RNU6-534P-201ENST00000364877 106 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 RNU6-417P-201ENST00000384712 107 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 MIR1253-201ENST00000408273 105 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 RNA5SP494-201ENST00000410653 129 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 MTCO2P19-201ENST00000427513 598 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 MTND3P16-201ENST00000452205 344 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 RNU7-180P-201ENST00000459240 63 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 MIR4424-201ENST00000585257 86 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AL365434.2-201ENST00000607979 234 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AC064836.2-201ENST00000609491 462 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AL158063.1-201ENST00000615349 536 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 AC009033.1-201ENST00000624279 431 ntBASIC0.74□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1187P-201ENST00000364771 110 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1240P-201ENST00000365155 104 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1329P-201ENST00000365664 107 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1158P-201ENST00000391167 107 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 AC073415.1-201ENST00000449240 153 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RNU7-57P-201ENST00000459540 60 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RPL23AP75-201ENST00000491601 451 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 HMGB1P29-201ENST00000505659 499 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 AC091874.1-201ENST00000511402 339 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 AL512310.8-201ENST00000550183 120 ntBASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.73□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1123P-201ENST00000362347 106 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 SNORD115-8-201ENST00000363856 82 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU1-124P-201ENST00000363861 145 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU4-67P-201ENST00000364569 141 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 SNORD115-38-201ENST00000365037 82 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU6-968P-201ENST00000384076 107 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNA5SP467-201ENST00000391274 118 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1054P-201ENST00000411293 104 ntBASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.72□□□□□ -2.29
SHANK3Q9BYB0 MTND3P9-201ENST00000429526 346 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 196 ms