Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-1026P-201ENST00000384465 108 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 MIR592-201ENST00000384959 97 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNA5SP210-201ENST00000391034 120 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AL357139.1-201ENST00000407792 426 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC139712.2-201ENST00000424302 339 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 HMGN2P18-201ENST00000450680 270 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SNORD127-201ENST00000458892 86 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC114982.1-201ENST00000469402 321 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU1-117P-201ENST00000517041 158 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC006006.1-201ENST00000603082 144 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 AC127459.3-201ENST00000624328 466 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNU6-1305P-201ENST00000364353 104 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNA5SP125-201ENST00000364843 120 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 SNORA72.2-201ENST00000365028 127 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR215-201ENST00000384858 110 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR548B-201ENST00000385247 97 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC016925.1-201ENST00000458303 298 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 HMGN2P9-201ENST00000476875 229 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 SRIP1-201ENST00000489235 288 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 ATP5EP1-201ENST00000510257 156 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC096725.1-201ENST00000514266 313 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RNU7-110P-201ENST00000516891 62 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 RN7SKP40-201ENST00000517211 242 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR3684-201ENST00000579779 74 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 MIR4753-201ENST00000585119 83 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC004467.1-201ENST00000615678 330 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AL590240.4-201ENST00000616908 390 ntBASIC2.53□□□□□ -2
PTCHD3Q3KNS1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
PTCHD3Q3KNS1 AC010615.1-201ENST00000594254 1764 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-545P-201ENST00000362681 104 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP126-201ENST00000365092 109 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.483-201ENST00000384380 101 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-21P-201ENST00000384710 107 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 MIR1185-2-201ENST00000408687 86 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-54P-201ENST00000410299 190 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC104389.3-201ENST00000445629 235 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC005042.3-201ENST00000453230 174 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 HSPE1P25-201ENST00000455484 251 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-107P-201ENST00000516643 102 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-965P-201ENST00000516721 96 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-570P-201ENST00000517051 105 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC023157.2-201ENST00000540596 141 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 AC004486.1-201ENST00000546846 233 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 MIR6817-201ENST00000615588 66 ntBASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
PTCHD3Q3KNS1 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-290P-201ENST00000365212 101 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.602-201ENST00000410535 92 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 HMGN2P35-201ENST00000412164 270 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1132P-201ENST00000459214 107 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC018868.1-201ENST00000491307 315 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC093259.1-201ENST00000509755 300 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP282-201ENST00000516355 108 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-948P-201ENST00000516374 107 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP148-201ENST00000516527 94 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 RNU2-34P-201ENST00000516534 121 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC055872.1-201ENST00000570978 278 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 MIR3671-201ENST00000580455 88 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AL109918.3-201ENST00000603072 338 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AP001282.2-201ENST00000616149 309 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 AC091932.3-201ENST00000624223 323 ntBASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
PTCHD3Q3KNS1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.101-201ENST00000363154 102 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNA5SP68-201ENST00000363885 119 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-438P-201ENST00000365561 103 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.446-201ENST00000384178 104 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-301P-201ENST00000384277 107 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-975P-201ENST00000384296 105 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-505P-201ENST00000384427 107 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.541-201ENST00000384640 113 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 Y_RNA.562-201ENST00000384695 113 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 RNU6-1199P-201ENST00000411249 104 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AC009963.1-201ENST00000417265 157 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 AL137159.1-201ENST00000452808 512 ntBASIC2.5□□□□□ -2.01
PTCHD3Q3KNS1 MTND4LP30-201ENST00000454092 297 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 190.6 ms