Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LSM1O15116 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.28■□□□□ 0.52
LSM1O15116 AC135050.7-201ENST00000624508 2218 ntBASIC18.27■□□□□ 0.52
LSM1O15116 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.27■□□□□ 0.52
LSM1O15116 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.27■□□□□ 0.52
LSM1O15116 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.27■□□□□ 0.52
LSM1O15116 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 MTDHP1-201ENST00000605323 784 ntBASIC18.27■□□□□ 0.52
LSM1O15116 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 AC004264.1-201ENST00000608354 794 ntBASIC18.27■□□□□ 0.52
LSM1O15116 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.27■□□□□ 0.52
LSM1O15116 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM1O15116 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM1O15116 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LSM1O15116 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
LSM1O15116 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
LSM1O15116 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LSM1O15116 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
LSM1O15116 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.26■□□□□ 0.51
LSM1O15116 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.26■□□□□ 0.51
LSM1O15116 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 AP003097.1-201ENST00000530657 1135 ntBASIC18.26■□□□□ 0.51
LSM1O15116 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.26■□□□□ 0.51
LSM1O15116 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.26■□□□□ 0.51
LSM1O15116 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 AC069544.1-201ENST00000609399 999 ntBASIC18.26■□□□□ 0.51
LSM1O15116 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.26■□□□□ 0.51
LSM1O15116 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LSM1O15116 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 AC011270.2-201ENST00000624293 2550 ntBASIC18.26■□□□□ 0.51
LSM1O15116 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM1O15116 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM1O15116 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.25■□□□□ 0.51
LSM1O15116 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
LSM1O15116 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 KRT8P41-201ENST00000533985 1514 ntBASIC18.25■□□□□ 0.51
LSM1O15116 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 HLA-L-209ENST00000420110 1011 ntBASIC18.25■□□□□ 0.51
LSM1O15116 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.25■□□□□ 0.51
LSM1O15116 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
LSM1O15116 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.25■□□□□ 0.51
LSM1O15116 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.25■□□□□ 0.51
LSM1O15116 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms