Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 MIR548Z-201ENST00000584743 97 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 AC007179.3-201ENST00000604976 235 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC61Q9Y6R9 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC61Q9Y6R9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.34□□□□□ -1.56
CCDC61Q9Y6R9 AL136964.1-201ENST00000622038 2990 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-1189P-201ENST00000383958 107 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 Y_RNA.607-201ENST00000410597 98 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 RNU2-49P-201ENST00000410666 184 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 AL513477.1-202ENST00000417061 214 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 HMGN2P31-201ENST00000432430 273 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 RPL23AP83-201ENST00000434984 473 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 AC106707.2-201ENST00000484182 374 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-1231P-201ENST00000517185 103 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 AC008507.4-201ENST00000585464 127 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 HMGN2P15-201ENST00000585707 270 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 AL161756.2-201ENST00000604597 246 ntBASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC61Q9Y6R9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 SNORA7.2-201ENST00000364446 145 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 MIR183-201ENST00000384958 110 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-948P-201ENST00000516374 107 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 MIR3683-201ENST00000580847 82 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 MIR4777-201ENST00000583710 86 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 MIR4438-201ENST00000585271 93 ntBASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC61Q9Y6R9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 AC010680.1-201ENST00000590024 3590 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 Y_RNA.4-201ENST00000362333 112 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-363P-201ENST00000362895 105 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 SNORA9-201ENST00000384215 133 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 Y_RNA.565-201ENST00000384719 101 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 RPS12P18-201ENST00000442381 270 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 SNORD108-201ENST00000459332 71 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-1096P-201ENST00000517089 102 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 AC006272.2-201ENST00000594725 163 ntBASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC61Q9Y6R9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 RNY1P4-201ENST00000384595 115 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 MIR34B-201ENST00000385076 84 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 HDGFP1-201ENST00000405943 252 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 PPBPP1-201ENST00000510807 373 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 RNA5SP164-201ENST00000516533 110 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 MIR3922-201ENST00000585192 84 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 AC008739.2-201ENST00000597006 317 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 AC244505.7-201ENST00000599675 272 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 AC022217.4-201ENST00000604389 163 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 U6.105-201ENST00000637379 88 ntBASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC61Q9Y6R9 AC093591.2-201ENST00000565254 3843 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-661P-201ENST00000362409 107 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 RNA5SP51-201ENST00000364750 119 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 MIR520G-201ENST00000385064 90 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 AC104619.4-201ENST00000510773 249 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 MIR4778-201ENST00000577635 80 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 MIR3618-201ENST00000580330 88 ntBASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 192.3 ms