Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR7851-201ENST00000610611 160 ntBASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC008555.8-201ENST00000623602 2168 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.116-201ENST00000363292 103 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-1048P-201ENST00000364054 107 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORA18.3-201ENST00000384122 132 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MT-TT-201ENST00000387460 66 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL031003.1-201ENST00000404229 172 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MIR1287-201ENST00000408492 90 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RHEBP3-201ENST00000411920 351 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RPL26P9-201ENST00000457466 433 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU1-41P-201ENST00000516161 162 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU1-48P-201ENST00000516400 162 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.677-201ENST00000516401 85 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.692-201ENST00000516627 105 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORA70.19-201ENST00000516717 90 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-537P-201ENST00000517277 103 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC006199.1-201ENST00000548728 219 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MIR4724-201ENST00000579485 89 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL136164.4-201ENST00000625013 2135 ntBASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AF117829.1-206ENST00000621883 3802 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MAPK10-373ENST00000641983 6772 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNY1P11-201ENST00000363759 113 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 U3.9-201ENST00000363823 204 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.229-201ENST00000364347 113 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.294-201ENST00000364916 102 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.368-201ENST00000365547 113 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MIR548A3-201ENST00000385297 97 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNY4P30-201ENST00000410216 95 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU4-43P-201ENST00000410628 137 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL031737.1-201ENST00000450125 223 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 snoU13.23-201ENST00000458863 104 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORA31.20-201ENST00000517111 133 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC133485.4-201ENST00000561835 220 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC138907.4-201ENST00000570107 226 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 snoZ196.1-201ENST00000625269 89 ntBASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-799P-201ENST00000363567 107 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-144P-201ENST00000383951 107 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.456-201ENST00000384232 111 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL591034.1-201ENST00000407447 340 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC009237.8-201ENST00000445492 379 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 S100A11P1-201ENST00000477525 312 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-561P-201ENST00000516222 102 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-107P-201ENST00000516643 102 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AP004371.1-201ENST00000525240 214 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNRPGP20-201ENST00000604477 205 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNVU1-4-201ENST00000612985 164 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC007496.3-201ENST00000624987 3443 ntBASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MIR367-201ENST00000362299 68 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 Y_RNA.35-201ENST00000362601 101 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 SNORD115-30-201ENST00000364117 82 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-454P-201ENST00000364292 107 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU1-100P-201ENST00000365255 165 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-597P-201ENST00000365620 102 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNU6-482P-201ENST00000391068 107 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AL158147.1-201ENST00000443970 75 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC125238.1-201ENST00000448842 249 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 CKS1BP7-201ENST00000522230 235 ntBASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.41□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SENP3-EIF4A1A0A087X0R7 RNY3P5-201ENST00000384127 102 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-140P-201ENST00000384566 108 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-855P-201ENST00000410395 104 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RPL37P4-201ENST00000448908 268 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-1061P-201ENST00000516530 99 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC025946.2-201ENST00000603398 234 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR6134-201ENST00000617606 109 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 241 ms