Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CDX1P47902 MIR340-201ENST00000362125 95 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNU6-593P-201ENST00000364716 112 ntBASIC1.81□□□□□ -2.12
CDX1P47902 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.81□□□□□ -2.12
CDX1P47902 SNORA70B-201ENST00000384210 135 ntBASIC1.81□□□□□ -2.12
CDX1P47902 Y_RNA.473-201ENST00000384333 102 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNU6-601P-201ENST00000384540 107 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNU6-1050P-201ENST00000410388 107 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RPL21P111-201ENST00000418453 477 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC243428.1-201ENST00000421099 264 ntBASIC1.81□□□□□ -2.12
CDX1P47902 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.81□□□□□ -2.12
CDX1P47902 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.81□□□□□ -2.12
CDX1P47902 MTCO1P44-201ENST00000441935 243 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC074290.1-201ENST00000448883 135 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNA5SP233-201ENST00000459153 113 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC010531.2-201ENST00000465012 153 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC114982.1-201ENST00000469402 321 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.81□□□□□ -2.12
CDX1P47902 AC026782.1-201ENST00000512952 449 ntBASIC1.81□□□□□ -2.12
CDX1P47902 SNORA25.14-201ENST00000516481 132 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNU1-40P-201ENST00000516816 164 ntBASIC1.81□□□□□ -2.12
CDX1P47902 RNU1-97P-201ENST00000516872 164 ntBASIC1.81□□□□□ -2.12
CDX1P47902 SUMO2P18-201ENST00000518873 252 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.81□□□□□ -2.12
CDX1P47902 MIR3935-201ENST00000583472 104 ntBASIC1.81□□□□□ -2.12
CDX1P47902 MIR4298-201ENST00000584380 73 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC011494.1-201ENST00000596454 237 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AL627230.6-201ENST00000611129 280 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC083806.3-201ENST00000614016 455 ntBASIC1.81□□□□□ -2.12
CDX1P47902 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.81□□□□□ -2.12
CDX1P47902 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
CDX1P47902 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.8□□□□□ -2.12
CDX1P47902 SNORD115-8-201ENST00000363856 82 ntBASIC1.8□□□□□ -2.12
CDX1P47902 RNU6-595P-201ENST00000363944 107 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.279-201ENST00000364763 95 ntBASIC1.8□□□□□ -2.12
CDX1P47902 SNORD115-38-201ENST00000365037 82 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.405-201ENST00000383979 100 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.451-201ENST00000384200 100 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.524-201ENST00000384564 100 ntBASIC1.8□□□□□ -2.12
CDX1P47902 SNORA8-201ENST00000384574 139 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.561-201ENST00000384694 100 ntBASIC1.8□□□□□ -2.12
CDX1P47902 MIR676-201ENST00000390702 67 ntBASIC1.8□□□□□ -2.12
CDX1P47902 FGF7P8-201ENST00000402994 292 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AL356432.1-201ENST00000405809 419 ntBASIC1.8□□□□□ -2.12
CDX1P47902 SNORA3.2-201ENST00000408221 125 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.594-201ENST00000410373 140 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AC004866.1-201ENST00000411748 78 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Z98742.3-201ENST00000418637 326 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AC244636.1-201ENST00000421152 228 ntBASIC1.8□□□□□ -2.12
CDX1P47902 HMGN2P19-201ENST00000425149 265 ntBASIC1.8□□□□□ -2.12
CDX1P47902 USMG5P1-201ENST00000425964 177 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AL445305.1-201ENST00000432577 575 ntBASIC1.8□□□□□ -2.12
CDX1P47902 HMGB1P18-201ENST00000438801 619 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AL357134.1-201ENST00000445848 426 ntBASIC1.8□□□□□ -2.12
CDX1P47902 PRDX4P1-201ENST00000507189 574 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AC097473.1-201ENST00000508142 408 ntBASIC1.8□□□□□ -2.12
CDX1P47902 AC008549.1-201ENST00000512900 643 ntBASIC1.8□□□□□ -2.12
CDX1P47902 RNVU1-2-201ENST00000516326 135 ntBASIC1.8□□□□□ -2.12
CDX1P47902 RNU6-948P-201ENST00000516374 107 ntBASIC1.8□□□□□ -2.12
CDX1P47902 RNA5SP281-201ENST00000516504 135 ntBASIC1.8□□□□□ -2.12
CDX1P47902 Y_RNA.708-201ENST00000516950 96 ntBASIC1.8□□□□□ -2.12
CDX1P47902 SNRPGP18-201ENST00000553000 214 ntBASIC1.8□□□□□ -2.12
CDX1P47902 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.8□□□□□ -2.12
CDX1P47902 uc_338.5-201ENST00000611839 155 ntBASIC1.8□□□□□ -2.12
CDX1P47902 PISRT1.1-201ENST00000616930 107 ntBASIC1.8□□□□□ -2.12
CDX1P47902 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
CDX1P47902 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CDX1P47902 RNU6-245P-201ENST00000384020 107 ntBASIC1.79□□□□□ -2.12
CDX1P47902 RNU6-17P-201ENST00000384245 107 ntBASIC1.79□□□□□ -2.12
CDX1P47902 Y_RNA.482-201ENST00000384377 111 ntBASIC1.79□□□□□ -2.12
CDX1P47902 Y_RNA.490-201ENST00000384413 102 ntBASIC1.79□□□□□ -2.12
CDX1P47902 RNU6-18P-201ENST00000384527 107 ntBASIC1.79□□□□□ -2.12
CDX1P47902 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CDX1P47902 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CDX1P47902 SNORA48.1-201ENST00000390879 135 ntBASIC1.79□□□□□ -2.12
CDX1P47902 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.79□□□□□ -2.12
CDX1P47902 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.79□□□□□ -2.12
CDX1P47902 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.79□□□□□ -2.12
CDX1P47902 AC103851.1-201ENST00000506833 274 ntBASIC1.79□□□□□ -2.12
CDX1P47902 MRPS17P9-201ENST00000511924 393 ntBASIC1.79□□□□□ -2.12
CDX1P47902 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.79□□□□□ -2.12
CDX1P47902 RNU1-117P-201ENST00000517041 158 ntBASIC1.79□□□□□ -2.12
CDX1P47902 AC134698.4-201ENST00000523451 826 ntBASIC1.79□□□□□ -2.12
CDX1P47902 CBX3P8-201ENST00000532412 525 ntBASIC1.79□□□□□ -2.12
CDX1P47902 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.79□□□□□ -2.12
CDX1P47902 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.79□□□□□ -2.12
CDX1P47902 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.79□□□□□ -2.12
CDX1P47902 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CDX1P47902 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
CDX1P47902 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
CDX1P47902 RNU6-137P-201ENST00000363680 108 ntBASIC1.78□□□□□ -2.12
CDX1P47902 Y_RNA.339-201ENST00000365325 102 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AL033519.2-201ENST00000403958 392 ntBASIC1.78□□□□□ -2.12
CDX1P47902 DPH3P2-201ENST00000422618 250 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.78□□□□□ -2.12
CDX1P47902 AC016717.1-201ENST00000448918 286 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC025033.1-201ENST00000463883 194 ntBASIC1.78□□□□□ -2.12
CDX1P47902 RPL23AP42-201ENST00000471152 471 ntBASIC1.78□□□□□ -2.12
CDX1P47902 RN7SL274P-201ENST00000492268 272 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC067942.3-201ENST00000512025 362 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 195.6 ms