Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC113195.1-201ENST00000579952 141 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AL360085.1-201ENST00000604713 532 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 AL034408.1-202ENST00000636088 415 ntBASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC28AQ8IWP9 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP197-201ENST00000363357 119 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.145-201ENST00000363527 102 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.415-201ENST00000384012 112 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.551-201ENST00000384661 102 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MRPL35P1-201ENST00000404272 572 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MIR1283-1-201ENST00000408494 87 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MIR1252-201ENST00000408861 65 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 SNORA40.9-201ENST00000515895 93 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.713-201ENST00000517013 96 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP402-201ENST00000517148 110 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 AC023632.4-201ENST00000517783 191 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MIR4659A-201ENST00000580269 81 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MIR4658-201ENST00000584344 65 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MIR4753-201ENST00000585119 83 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 AC240442.1-201ENST00000616055 283 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 AC010205.1-201ENST00000616668 449 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 AC034229.5-201ENST00000624258 185 ntBASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-545P-201ENST00000362681 104 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-1305P-201ENST00000364353 104 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-926P-201ENST00000384075 107 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 SNORA5A-201ENST00000384111 134 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 SNORA67.2-201ENST00000384300 149 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.471-201ENST00000384312 102 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP181-201ENST00000410246 98 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP504-201ENST00000410676 117 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 SRIP3-201ENST00000413200 219 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RPS29P4-201ENST00000414733 161 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC113618.1-201ENST00000416747 285 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AL133547.1-201ENST00000448546 220 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC074290.1-201ENST00000448883 135 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AL137159.1-201ENST00000452808 512 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC016925.1-201ENST00000458303 298 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC114982.1-201ENST00000469402 321 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC106707.2-201ENST00000484182 374 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-991P-201ENST00000516168 107 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 PRELID2P1-201ENST00000552837 301 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AL357075.2-201ENST00000614906 189 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 AL078596.1-201ENST00000624856 447 ntBASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC28AQ8IWP9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 RNA5SP50-201ENST00000363731 107 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.458-201ENST00000384240 102 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 PTMAP2-201ENST00000397627 327 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 NDUFB4P10-201ENST00000452541 359 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 PRELID3BP1-201ENST00000457142 540 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 U8.20-201ENST00000459445 131 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 HMGN2P9-201ENST00000476875 229 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AC093259.1-201ENST00000509755 300 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AC067942.3-201ENST00000512025 362 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 SNORA4.4-201ENST00000515921 135 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 RNU6-327P-201ENST00000516270 127 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.720-201ENST00000517166 92 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 CYCSP26-201ENST00000534107 320 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AC233702.2-202ENST00000562547 291 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AL355297.3-201ENST00000604082 446 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.772-201ENST00000606692 102 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 PART1_1.1-201ENST00000611761 217 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 AL121772.2-201ENST00000614331 297 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC28AQ8IWP9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.152-201ENST00000363578 100 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 U3.8-201ENST00000363675 217 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 SNORD87-201ENST00000364849 89 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 Y_RNA.332-201ENST00000365271 113 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 RNU1-148P-201ENST00000384472 162 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 SNORA80E-201ENST00000384744 137 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 MIR144-201ENST00000384886 86 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 AL356057.3-201ENST00000402607 340 ntBASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC28AQ8IWP9 MTND2P23-201ENST00000422990 651 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 214.9 ms