Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MIR3611-201ENST00000584484 83 ntBASIC1.75□□□□□ -2.13
CCDC43Q96MW1 MIR5692C1-201ENST00000585309 91 ntBASIC1.75□□□□□ -2.13
CCDC43Q96MW1 AP000648.3-201ENST00000623539 4507 ntBASIC1.75□□□□□ -2.13
CCDC43Q96MW1 RNU6-862P-201ENST00000362804 105 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNU6-1317P-201ENST00000364582 104 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNU4-20P-201ENST00000365601 151 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNU6-877P-201ENST00000383868 107 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNU6-1119P-201ENST00000384349 108 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNY3P9-201ENST00000384727 106 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 MIR517C-201ENST00000385103 95 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC083798.1-201ENST00000472671 131 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC027575.1-201ENST00000481064 460 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC023790.1-201ENST00000482174 347 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC025465.3-201ENST00000510570 311 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 DEFB131C-201ENST00000528817 165 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC010620.1-201ENST00000601088 1102 ntBASIC1.74□□□□□ -2.13
CCDC43Q96MW1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC43Q96MW1 RNU6-418P-201ENST00000384035 107 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 TIMM9P3-201ENST00000428659 274 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 RNU6-261P-201ENST00000459506 102 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 U8.21-201ENST00000459536 136 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 HMGN1P13-201ENST00000505795 138 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC43Q96MW1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC43Q96MW1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC43Q96MW1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.73□□□□□ -2.13
CCDC43Q96MW1 RNU6-562P-201ENST00000362731 107 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 RNU6-1322P-201ENST00000364309 107 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SNORD116-9-201ENST00000384000 95 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SNORD116-3-201ENST00000384287 95 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SNORD116-7-201ENST00000384404 95 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SNORD116-5-201ENST00000384462 95 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC43Q96MW1 snoU13.9-201ENST00000458927 103 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SRRM1P2-201ENST00000464531 1192 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 RNU6-1041P-201ENST00000516254 102 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AC016256.1-201ENST00000547971 354 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 SCOCP1-201ENST00000554676 349 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AL157687.1-201ENST00000554853 619 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AC015720.1-201ENST00000565251 277 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.72□□□□□ -2.13
CCDC43Q96MW1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC43Q96MW1 AC068792.1-201ENST00000621354 417 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC43Q96MW1 MIR6863-201ENST00000636112 90 ntBASIC1.72□□□□□ -2.13
CCDC43Q96MW1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CCDC43Q96MW1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC43Q96MW1 Y_RNA.123-201ENST00000363338 102 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 RNU6-414P-201ENST00000363705 104 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 RNU6-1042P-201ENST00000384204 107 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 RNA5SP494-201ENST00000410653 129 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 HSPE1P9-201ENST00000440046 311 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC098826.2-201ENST00000452011 651 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 MTND3P16-201ENST00000452205 344 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AMD1P1-201ENST00000457220 922 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 snoU13.30-201ENST00000458951 104 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 Y_RNA.654-201ENST00000497848 106 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC092436.3-201ENST00000511788 257 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 SNORA19.2-201ENST00000516013 114 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 RNA5SP458-201ENST00000516188 119 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 SNORD60.2-201ENST00000516883 86 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 SNORA31.24-201ENST00000517232 57 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 MRPS36P4-201ENST00000534436 298 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AP005136.1-201ENST00000579765 429 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC016727.2-201ENST00000603988 621 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 CTHRC1P1-201ENST00000605383 469 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AC092807.2-201ENST00000609367 243 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 AL158209.2-201ENST00000619266 216 ntBASIC1.71□□□□□ -2.14
CCDC43Q96MW1 FER-210ENST00000628534 558 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC43Q96MW1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
CCDC43Q96MW1 MTND5P26-201ENST00000426018 1752 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 RNU5B-2P-201ENST00000363036 113 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 RNU6-457P-201ENST00000363999 107 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC43Q96MW1 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 MIR1323-201ENST00000408090 73 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 MIR1304-201ENST00000408243 91 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 MRPS10P2-201ENST00000431226 381 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 UBE2V1P8-201ENST00000437166 265 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 AL357134.1-201ENST00000445848 426 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC43Q96MW1 AC091885.1-201ENST00000506658 268 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 RNU6-237P-201ENST00000515985 71 ntBASIC1.7□□□□□ -2.14
CCDC43Q96MW1 SNORA77B-201ENST00000578179 125 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 207.1 ms