Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CCDC61Q9Y6R9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 AL161912.2-201ENST00000565707 3007 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 Y_RNA.10-201ENST00000362371 110 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 MIR195-201ENST00000385194 87 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 RNA5SP511-201ENST00000410487 115 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 AL356535.1-201ENST00000440335 398 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 MIR5684-201ENST00000585074 65 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 AC140113.4-201ENST00000622087 222 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 CR392039.5-201ENST00000623201 510 ntBASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC61Q9Y6R9 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 SNORA60-201ENST00000362396 134 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 MIR548D2-201ENST00000384955 97 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 Y_RNA.601-201ENST00000410500 113 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AL353689.1-201ENST00000438895 199 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 RNU7-171P-201ENST00000459581 62 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 RPS26P48-201ENST00000491713 339 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 HSPE1P18-201ENST00000517602 280 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 RPL17P51-201ENST00000605218 238 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 MIR6868-201ENST00000611215 58 ntBASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC61Q9Y6R9 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC61Q9Y6R9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC61Q9Y6R9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC61Q9Y6R9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.51
CCDC61Q9Y6R9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 Y_RNA.796-201ENST00000364268 102 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 Y_RNA.799-201ENST00000364992 102 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 SNORD96B-201ENST00000386148 79 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 MIR1912-201ENST00000410389 80 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 AC107626.1-201ENST00000471084 183 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 AC097462.1-201ENST00000514125 324 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 RNU7-61P-201ENST00000515897 61 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 RN7SKP46-201ENST00000515942 234 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 Six3os1_7.1-201ENST00000621512 201 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 AL356489.2-201ENST00000566968 3528 ntBASIC5.64□□□□□ -1.51
CCDC61Q9Y6R9 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 RNU6-1209P-201ENST00000363655 107 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 AL031121.1-201ENST00000406553 254 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 PTMAP3-201ENST00000447474 330 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 SNORD65B-201ENST00000459126 73 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 RN7SKP209-201ENST00000516888 304 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 AC005005.4-201ENST00000623789 16698 ntBASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC61Q9Y6R9 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 RNA5SP124-201ENST00000362739 110 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 SNORA51.4-201ENST00000364993 124 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 RNA5SP354-201ENST00000391247 136 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 AL451046.2-201ENST00000403074 277 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 GOT2P5-201ENST00000433995 546 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 AC024220.1-201ENST00000603675 484 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 JPX_2.1-201ENST00000614161 69 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 AL121772.2-201ENST00000614331 297 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 U7.3-201ENST00000616123 62 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 AL031595.2-201ENST00000624215 19071 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 FAM35BP-202ENST00000497389 3337 ntBASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC61Q9Y6R9 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms