Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-199P-201ENST00000362954 107 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU4-80P-201ENST00000363200 141 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-137P-201ENST00000363680 108 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-270P-201ENST00000364131 105 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-281P-201ENST00000384212 103 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-1145P-201ENST00000384246 107 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-178P-201ENST00000384631 104 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MIR329-1-201ENST00000385028 80 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-1248P-201ENST00000391096 64 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SNORA40C-201ENST00000391285 128 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AL513477.1-202ENST00000417061 214 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC008155.2-201ENST00000464337 397 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC090616.3-201ENST00000582184 217 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 U73479.1-201ENST00000618062 168 ntBASIC4.83□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.40-201ENST00000362645 93 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-78P-201ENST00000362897 107 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-283P-201ENST00000364788 107 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.319-201ENST00000365138 92 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.420-201ENST00000384043 110 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 FABP5P15-201ENST00000453566 214 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 snoU13.3-201ENST00000459441 104 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AF186996.7-201ENST00000492781 209 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-659P-201ENST00000516454 104 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-844P-201ENST00000517175 102 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MIR3613-201ENST00000579844 87 ntBASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC008568.2-201ENST00000623862 2313 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC009812.4-201ENST00000569134 1805 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SNORA72.2-201ENST00000365028 127 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.309-201ENST00000365046 111 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.542-201ENST00000384641 111 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 U3.19-201ENST00000390893 196 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-837P-201ENST00000391056 108 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC005300.1-201ENST00000428401 373 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC010095.1-201ENST00000443543 144 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RN7SKP179-201ENST00000516126 217 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC022790.1-201ENST00000522872 204 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 DEFB131C-201ENST00000528817 165 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC127455.1-201ENST00000565496 145 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MIR4727-201ENST00000622232 55 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SNORD9-201ENST00000362566 104 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-105P-201ENST00000363909 104 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 Y_RNA.466-201ENST00000384294 113 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC007560.1-201ENST00000426912 237 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 EEF1B2P7-201ENST00000451177 676 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AP002884.2-201ENST00000471647 395 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-1198P-201ENST00000516904 67 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SNORA31.19-201ENST00000517079 126 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC115990.1-201ENST00000526957 301 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AP004242.1-201ENST00000533701 349 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AL138963.2-201ENST00000605137 226 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC027309.3-201ENST00000623419 351 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 SCARNA4-202ENST00000625402 129 ntBASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.8□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-476P-201ENST00000384726 107 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RPS15AP5-201ENST00000436276 388 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 S100A11P2-201ENST00000467589 312 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 MIR2114-201ENST00000516645 80 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC022616.8-201ENST00000533569 253 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC011603.4-201ENST00000611325 277 ntBASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-103P-201ENST00000363686 107 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-755P-201ENST00000364400 103 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-166P-201ENST00000384371 107 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-429P-201ENST00000384582 108 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 RNU6-159P-201ENST00000391080 106 ntBASIC4.78□□□□□ -1.64
SENP3-EIF4A1A0A087X0R7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms