Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU6-428P-201ENST00000362942 107 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP50-201ENST00000363731 107 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SNORA5B-201ENST00000363786 132 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-1175P-201ENST00000365200 107 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 Y_RNA.331-201ENST00000365267 102 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-239P-201ENST00000390990 99 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MTND4LP9-201ENST00000427694 174 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL627311.1-201ENST00000431514 115 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 UBE2CP3-201ENST00000502715 450 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CYCTP-201ENST00000504253 315 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC084851.1-201ENST00000529105 249 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR4679-1-201ENST00000637619 75 ntBASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-211P-201ENST00000384047 107 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-20P-201ENST00000384106 107 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU2-2P-201ENST00000410396 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-603P-201ENST00000411403 107 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-567P-201ENST00000516746 107 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP471-201ENST00000516971 106 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL360157.1-201ENST00000565962 87 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL645944.1-201ENST00000603857 493 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU2-4P-201ENST00000606190 192 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.15-201ENST00000611544 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.16-201ENST00000613119 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.12-201ENST00000613778 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC005520.5-201ENST00000613926 164 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.9-201ENST00000615427 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.11-201ENST00000616345 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.2-201ENST00000616535 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.3-201ENST00000617785 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.19-201ENST00000618602 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU2-1-201ENST00000618664 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.6-201ENST00000619225 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.5-201ENST00000619465 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 U2.10-201ENST00000620268 191 ntBASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP361-201ENST00000362686 118 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 Y_RNA.182-201ENST00000363880 111 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU1-89P-201ENST00000384592 164 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR153-2-201ENST00000385225 87 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR199A2-201ENST00000385289 110 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR513C-201ENST00000401352 84 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC016925.1-201ENST00000458303 298 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 UBL5P3-201ENST00000475112 231 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RPL23AP75-201ENST00000491601 451 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RN7SKP18-201ENST00000516005 275 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 HMGB1P14-201ENST00000557424 591 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR4325-201ENST00000583049 90 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL670379.2-201ENST00000604983 252 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR486-1-201ENST00000612171 68 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC090617.7-201ENST00000623952 126 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MAPK10-372ENST00000641954 3413 ntBASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.94□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU5A-1-201ENST00000362698 116 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-818P-201ENST00000364837 108 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-968P-201ENST00000384076 107 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR10A-201ENST00000385043 110 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 MIR34A-201ENST00000385130 110 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP213-201ENST00000391031 106 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 PTGES3P4-201ENST00000426243 356 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC124916.1-201ENST00000444020 547 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AP000870.1-201ENST00000472927 406 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU4-57P-201ENST00000515980 135 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 KLKP1-201ENST00000595979 403 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC068831.7-201ENST00000616954 363 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL360181.4-201ENST00000621752 134 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AC110774.1-201ENST00000623567 2018 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SAGE2P-201ENST00000420011 2126 ntBASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-1167P-201ENST00000363227 94 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNA5SP197-201ENST00000363357 119 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU4-17P-201ENST00000365598 141 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 SNORA36C-201ENST00000384289 132 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 RNU6-882P-201ENST00000391025 103 ntBASIC4.92□□□□□ -1.62
SENP3-EIF4A1A0A087X0R7 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 189.7 ms