Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL356535.1-201ENST00000440335 398 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MRPS10P1-201ENST00000448483 130 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.641-201ENST00000459414 105 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPS27AP9-201ENST00000477681 438 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNA5SP170-201ENST00000517150 101 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MIR4524B-201ENST00000581569 115 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL451007.1-201ENST00000595491 289 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RMST_6.1-201ENST00000611980 203 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC006001.4-201ENST00000622243 395 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SCARNA4-201ENST00000629045 128 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL353743.1-202ENST00000431724 1695 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.230-201ENST00000364348 109 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MIR539-201ENST00000365690 78 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU1-139P-201ENST00000391307 165 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 BTF3L4P2-201ENST00000392798 346 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 DBIP2-201ENST00000419076 262 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SEPT7P4-201ENST00000437076 306 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC009296.1-201ENST00000443146 155 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPL21P13-201ENST00000488305 481 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA70.18-201ENST00000516696 98 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC116447.1-201ENST00000613153 453 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC107027.3-201ENST00000565095 3473 ntBASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.99□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.75-201ENST00000362927 97 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.121-201ENST00000363309 113 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-626P-201ENST00000363354 107 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-1255P-201ENST00000363434 112 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA80A-201ENST00000363922 136 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORD14B-201ENST00000364533 90 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNA5SP97-201ENST00000365006 84 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 WARS2P1-201ENST00000429678 537 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PDCD5P2-201ENST00000507570 312 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 HMGB3P3-201ENST00000510526 400 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA40.9-201ENST00000515895 93 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-1114P-201ENST00000516022 107 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC055872.1-201ENST00000570978 278 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MIR7843-201ENST00000622274 79 ntBASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC135776.4-201ENST00000624300 1904 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORD115-32-201ENST00000364079 82 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-512P-201ENST00000364438 103 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-898P-201ENST00000365627 104 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-1056P-201ENST00000383996 107 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.412-201ENST00000384001 104 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MIR490-201ENST00000384865 128 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA48.8-201ENST00000391324 134 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL513331.1-201ENST00000411908 397 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPL30P13-201ENST00000418873 348 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RAB28P5-201ENST00000427490 651 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPL26P26-201ENST00000480251 434 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-377P-201ENST00000515965 102 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.686-201ENST00000516548 134 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RN7SKP49-201ENST00000516675 260 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA31.22-201ENST00000517204 135 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AP002001.1-203ENST00000534002 267 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC010928.2-201ENST00000588017 287 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL137849.1-201ENST00000604767 169 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MIR4496-201ENST00000635896 61 ntBASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 223 ms