Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USP9YP18-201ENST00000425912 695 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AL117351.1-201ENST00000438864 766 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC107934.1-201ENST00000522215 217 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 MIR4307-201ENST00000582802 84 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AL022154.1-201ENST00000604698 785 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AL139022.2-201ENST00000606934 443 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC022893.3-201ENST00000607665 437 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC009233.1-201ENST00000616477 371 ntBASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.3□□□□□ -2.2
SHANK3Q9BYB0 AC100821.1-201ENST00000523153 2479 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU1-62P-201ENST00000362599 164 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-433P-201ENST00000363216 104 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU4-28P-201ENST00000364739 141 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-395P-201ENST00000365662 106 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-925P-201ENST00000384629 104 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 OR51A5P-201ENST00000415429 942 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 MTCO3P5-201ENST00000433620 714 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC004854.1-201ENST00000440356 349 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC109927.2-201ENST00000506416 303 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 LRRC34P2-201ENST00000514850 553 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-678P-201ENST00000516832 109 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-677P-201ENST00000516914 101 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 MIR15A-201ENST00000607334 83 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC091965.4-201ENST00000607691 587 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 Z99571.1-201ENST00000636677 394 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC008555.8-201ENST00000623602 2168 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AL512604.1-201ENST00000404812 257 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 FCF1P10-201ENST00000407590 479 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-1025P-201ENST00000410629 104 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RPS27AP14-201ENST00000422868 454 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AL354941.1-201ENST00000438600 464 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 GDI2P2-201ENST00000445131 608 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 NDUFB1P2-201ENST00000449477 176 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RPL31P58-201ENST00000469001 379 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU11-2P-201ENST00000516898 142 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 MTATP6P15-201ENST00000527233 835 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC079598.5-201ENST00000547460 117 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AL713866.2-201ENST00000603579 219 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 BCRP9-201ENST00000605312 388 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC018638.7-201ENST00000605836 1114 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC007490.1-201ENST00000624321 703 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 AC103706.2-201ENST00000638080 240 ntBASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SHANK3Q9BYB0 RNU6-942P-201ENST00000363002 107 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 RNU6-946P-201ENST00000383878 107 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 Y_RNA.534-201ENST00000384599 112 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 RPL22P18-201ENST00000417197 377 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC244636.1-201ENST00000421152 228 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AL606662.1-201ENST00000445763 553 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC092001.1-201ENST00000453012 261 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AP001324.2-201ENST00000461163 319 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC055731.1-201ENST00000474387 401 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 MTND2P14-201ENST00000482139 351 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 MTND3P3-201ENST00000505004 126 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 RNA5SP137-201ENST00000516833 135 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 SNORA31.19-201ENST00000517079 126 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 CYCSP23-201ENST00000519781 313 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 DPPA3P3-201ENST00000603842 430 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC005034.5-201ENST00000604219 466 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC013244.3-201ENST00000605614 388 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AL050343.2-201ENST00000607338 280 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 RNU6-87P-201ENST00000607561 108 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC130324.3-201ENST00000614165 542 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 AC007792.1-201ENST00000623023 402 ntBASIC1.28□□□□□ -2.2
SHANK3Q9BYB0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 MIR412-201ENST00000362142 91 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 Y_RNA.46-201ENST00000362695 102 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 RNU6-511P-201ENST00000363496 107 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 RNU6-1176P-201ENST00000390955 107 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 RNU2-39P-201ENST00000410604 198 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 AL591704.2-201ENST00000421658 181 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 AL354692.1-201ENST00000423044 315 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 MTND1P20-201ENST00000430341 950 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 KLF3P2-201ENST00000465138 268 ntBASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.27□□□□□ -2.21
SHANK3Q9BYB0 SMURF2P1-201ENST00000514992 481 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms