Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.82□□□□□ -1.8
EPHB3P54753 AP001486.2-201ENST00000561652 5113 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
EPHB3P54753 RNU6-1074P-201ENST00000383995 104 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 RNU6-1027P-201ENST00000383998 107 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 RNU6-1181P-201ENST00000384191 106 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.82□□□□□ -1.8
EPHB3P54753 MTCO1P39-201ENST00000426148 480 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 AC091390.3-201ENST00000426478 338 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 AP000907.1-201ENST00000428428 510 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 AC005002.2-201ENST00000438228 269 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.82□□□□□ -1.8
EPHB3P54753 snoU13.24-201ENST00000458998 104 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 RPS20P22-201ENST00000473700 357 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 RNA5SP309-201ENST00000516670 106 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 MIR4644-201ENST00000579929 84 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 SNORD113-5-201ENST00000607261 78 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 AC090617.7-201ENST00000623952 126 ntBASIC3.82□□□□□ -1.8
EPHB3P54753 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.82□□□□□ -1.8
EPHB3P54753 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
EPHB3P54753 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.82□□□□□ -1.8
EPHB3P54753 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.82□□□□□ -1.8
EPHB3P54753 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
EPHB3P54753 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
EPHB3P54753 OR4G2P-202ENST00000641004 1759 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.81□□□□□ -1.8
EPHB3P54753 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
EPHB3P54753 AC090740.1-201ENST00000623193 2262 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 Y_RNA.233-201ENST00000364407 101 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 Y_RNA.275-201ENST00000364726 110 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 Y_RNA.383-201ENST00000383855 97 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 SNORA40C-201ENST00000391285 128 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 RNU6-394P-201ENST00000410735 107 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 RN7SKP51-201ENST00000410781 304 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 MTCO1P5-201ENST00000433573 344 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.81□□□□□ -1.8
EPHB3P54753 snoU13.30-201ENST00000458951 104 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 TOMM22P6-201ENST00000465035 409 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AC010285.1-201ENST00000470580 392 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AL049874.1-201ENST00000489560 388 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AC010265.1-201ENST00000513509 211 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 MTND5P41-201ENST00000517498 206 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.81□□□□□ -1.8
EPHB3P54753 AC107016.1-201ENST00000550463 337 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.81□□□□□ -1.8
EPHB3P54753 MIR3144-201ENST00000579460 79 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 BRDTP1-201ENST00000605735 677 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 SCARNA4-201ENST00000629045 128 ntBASIC3.81□□□□□ -1.8
EPHB3P54753 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.81□□□□□ -1.8
EPHB3P54753 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
EPHB3P54753 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
EPHB3P54753 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
EPHB3P54753 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
EPHB3P54753 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.8□□□□□ -1.8
EPHB3P54753 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
EPHB3P54753 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
EPHB3P54753 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.82-201ENST00000363000 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.92-201ENST00000363043 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.235-201ENST00000364412 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RNU6-336P-201ENST00000364891 107 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.306-201ENST00000365015 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.312-201ENST00000365089 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.322-201ENST00000365151 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.8□□□□□ -1.8
EPHB3P54753 RNU6-17P-201ENST00000384245 107 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RNU6-18P-201ENST00000384527 107 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 MIR34A-201ENST00000385130 110 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
EPHB3P54753 RNU6-918P-201ENST00000391219 106 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 PTMAP5-201ENST00000393073 333 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.8□□□□□ -1.8
EPHB3P54753 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.8□□□□□ -1.8
EPHB3P54753 Z85995.1-201ENST00000415547 335 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Z82188.1-201ENST00000436709 154 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.650-201ENST00000459002 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RNU6-377P-201ENST00000515965 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RNU2-58P-201ENST00000516403 183 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 RN7SKP209-201ENST00000516888 304 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.777-201ENST00000516982 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.8□□□□□ -1.8
EPHB3P54753 MIR4423-201ENST00000580922 80 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.8□□□□□ -1.8
EPHB3P54753 SNORD84-203ENST00000584275 78 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AC010928.2-201ENST00000588017 287 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.771-201ENST00000598668 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AL161756.2-201ENST00000604597 246 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AC037487.3-201ENST00000606668 112 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 uc_338.32-201ENST00000615087 172 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.8□□□□□ -1.8
EPHB3P54753 Y_RNA.789-201ENST00000622480 102 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 U4.7-201ENST00000638126 106 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 AL049781.1-201ENST00000623195 3585 ntBASIC3.8□□□□□ -1.8
EPHB3P54753 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
EPHB3P54753 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
EPHB3P54753 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 204.9 ms