Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 EI24P1-201ENST00000416584 867 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC092573.2-201ENST00000434546 243 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-1037P-201ENST00000459571 107 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 FTH1P24-201ENST00000503502 462 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC016065.2-201ENST00000514530 444 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU1-95P-201ENST00000516357 160 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU1-128P-201ENST00000516704 160 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR2355-201ENST00000517199 87 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 IGLVIV-53-201ENST00000520107 367 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC025627.2-201ENST00000576220 160 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LRRC37A5P-203ENST00000580181 585 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR5684-201ENST00000585074 65 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC013412.1-201ENST00000610687 192 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC034102.8-201ENST00000615146 484 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC074140.1-201ENST00000621617 208 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC091895.1-201ENST00000624494 256 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MTND1P7-201ENST00000632801 297 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC008725.1-201ENST00000605123 2263 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORA5A-201ENST00000384111 134 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-817P-201ENST00000391083 104 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL21P75-201ENST00000396599 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL21P28-201ENST00000401418 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL23AP36-201ENST00000413895 458 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL590556.1-201ENST00000423231 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL21P11-201ENST00000461458 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL21P39-201ENST00000463605 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RN7SL807P-201ENST00000470923 297 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC132942.1-201ENST00000486753 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC093591.1-201ENST00000491435 481 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL21P16-201ENST00000495531 483 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL31P61-201ENST00000496160 376 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-347P-201ENST00000516658 105 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC103783.1-201ENST00000520506 373 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AP000859.1-201ENST00000525536 307 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC011921.3-201ENST00000605540 361 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 U3.45-201ENST00000607547 219 ntBASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 CEP170P1-201ENST00000502249 4587 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-249P-201ENST00000363016 102 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 Y_RNA.497-201ENST00000384447 98 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORD20-201ENST00000384550 80 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 HSPE1P8-201ENST00000406997 288 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-1135P-201ENST00000411083 103 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ELOCP18-201ENST00000434209 337 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC069285.2-201ENST00000440210 275 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RN7SL293P-201ENST00000481765 281 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL592156.1-201ENST00000508758 304 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MTND3P25-201ENST00000509243 135 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 TRAPPC2P7-201ENST00000509650 231 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORD116-28-201ENST00000516123 91 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AP006245.1-201ENST00000522549 120 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 CR383656.7-201ENST00000548164 174 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC037487.3-201ENST00000606668 112 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL133243.3-201ENST00000617415 3004 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SCN1A-220ENST00000641603 12506 ntBASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPL9P7-201ENST00000330965 580 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU1-108P-201ENST00000362556 161 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORD50.1-201ENST00000362987 71 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNA5SP399-201ENST00000364003 117 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 CRP-203ENST00000368111 512 ntTSL 3 BASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR521-1-201ENST00000384902 87 ntBASIC5.34□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms