Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AP002512.4-202ENST00000641599 4530 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 AC004817.4-201ENST00000602396 3625 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RNY3P5-201ENST00000384127 102 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 MIR514A1-201ENST00000385133 98 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RNU6-603P-201ENST00000411403 107 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 H2AFZP5-201ENST00000446960 382 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 PPIAP21-201ENST00000464473 501 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RPS20P22-201ENST00000473700 357 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 AC016632.1-201ENST00000503994 196 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RN7SKP19-201ENST00000516016 252 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RN7SKP21-201ENST00000516503 220 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 AP004607.1-201ENST00000524456 203 ntBASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC61Q9Y6R9 ZNF137P-201ENST00000456718 1920 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 Y_RNA.219-201ENST00000364232 113 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 RNU6-1107P-201ENST00000364817 104 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 Y_RNA.328-201ENST00000365208 113 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 AL590762.2-201ENST00000395798 571 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 U3.37-201ENST00000408528 213 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 AC098614.2-201ENST00000426040 255 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 UQCRHP4-201ENST00000471686 272 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 AC025166.1-201ENST00000612411 163 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 OR14L1P-202ENST00000641545 3009 ntBASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
CCDC61Q9Y6R9 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AL672167.1-205ENST00000641112 3080 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 Y_RNA.281-201ENST00000364774 94 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 SNORD18B-201ENST00000365659 72 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AC074117.2-201ENST00000417130 397 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AC004975.1-201ENST00000428733 208 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AC004386.2-201ENST00000441858 148 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AL591473.1-201ENST00000464297 313 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AC011276.1-201ENST00000469688 323 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 RNA5SP464-201ENST00000516251 108 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 MIR378D2-201ENST00000580636 98 ntBASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC61Q9Y6R9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 snoU13.6-201ENST00000458785 104 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 SNRPGP7-201ENST00000469016 106 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 AC091179.3-201ENST00000474761 144 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 AC006445.2-201ENST00000510061 472 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 RNU6-781P-201ENST00000516377 101 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 HSPE1P4-201ENST00000550617 308 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 U73479.1-201ENST00000618062 168 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 U3.53-201ENST00000628922 216 ntBASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC61Q9Y6R9 AC125257.1-201ENST00000560400 2930 ntBASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 253.8 ms