Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC100870.1-201ENST00000522035 505 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 DEFB108D-201ENST00000527787 222 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AC126177.3-201ENST00000551839 688 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AP001485.1-201ENST00000604799 199 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AL034351.1-201ENST00000605288 668 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 MIR3653-201ENST00000625572 110 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AL137003.2-201ENST00000606924 2538 ntBASIC4.66□□□□□ -1.66
CCDC39Q9UFE4 AC005183.1-201ENST00000603687 1979 ntBASIC4.65□□□□□ -1.66
CCDC39Q9UFE4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC39Q9UFE4 AC007390.2-201ENST00000606229 3803 ntBASIC4.65□□□□□ -1.66
CCDC39Q9UFE4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC39Q9UFE4 MIR383-201ENST00000362257 73 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 Y_RNA.16-201ENST00000362421 102 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 SNORD81.1-201ENST00000363064 77 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 RNU1-32P-201ENST00000363937 159 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 DAP3P1-201ENST00000441522 278 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AL590399.6-201ENST00000446396 307 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 SNORD108-201ENST00000459332 71 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AC091167.1-201ENST00000492017 396 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 NDUFB4P9-201ENST00000511646 388 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 MIR4284-201ENST00000578924 81 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AC012119.1-201ENST00000603184 222 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 RNA5SP108-201ENST00000605921 117 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AL591516.1-201ENST00000611326 274 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AC008725.1-201ENST00000605123 2263 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 AC116667.1-201ENST00000604855 2072 ntBASIC4.65□□□□□ -1.67
CCDC39Q9UFE4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 ZNF285B-201ENST00000561698 1767 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RNVU1-3-201ENST00000364313 161 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RNU6-1303P-201ENST00000364841 107 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RNU6-790P-201ENST00000384479 105 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 SNORD115-46-201ENST00000390982 71 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 U3.42-201ENST00000408746 214 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RNU2-51P-201ENST00000410708 197 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AL445305.1-201ENST00000432577 575 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 OR4C10P-201ENST00000434991 931 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AC006011.1-201ENST00000442758 349 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AL500522.2-201ENST00000448562 343 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 UQCRHP4-201ENST00000471686 272 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RPL7P23-201ENST00000493874 747 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RPL29P14-201ENST00000495837 428 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 SERF1AP1-201ENST00000514575 187 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RNU7-200P-201ENST00000516105 62 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AC022559.1-201ENST00000520905 205 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AMZ2P1-203ENST00000565833 850 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RPL23AP87-202ENST00000573039 466 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 U73479.1-201ENST00000618062 168 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 U7.8-201ENST00000619968 63 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 MIR7641-1-201ENST00000627518 61 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 AP000560.1-201ENST00000624150 1937 ntBASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC39Q9UFE4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-1317P-201ENST00000364582 104 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-701P-201ENST00000384059 107 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-45P-201ENST00000384471 107 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-1117P-201ENST00000384525 104 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 SNORA69.1-201ENST00000390904 137 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-754P-201ENST00000391166 107 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RNU6-735P-201ENST00000410612 107 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AL030996.1-201ENST00000411430 235 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 RPS27AP12-201ENST00000429552 465 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC092423.1-201ENST00000430165 186 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 AC127537.2-201ENST00000439258 465 ntBASIC4.63□□□□□ -1.67
CCDC39Q9UFE4 GAPDHP27-201ENST00000447427 1020 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 253.4 ms