Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPL31P60-201ENST00000478450 367 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 CBX3P3-201ENST00000508108 532 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 HIGD1AP17-201ENST00000554576 276 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC011260.1-201ENST00000578420 472 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 HSPE1P7-201ENST00000604681 321 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 RNU6-1192P-201ENST00000612197 107 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 RNU6-489P-201ENST00000618289 107 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC107982.1-201ENST00000507171 1300 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 RNU6-560P-201ENST00000364007 108 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AL079342.2-201ENST00000403367 482 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 MTATP6P27-201ENST00000416987 621 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 CCDC58P2-201ENST00000417131 366 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 OR10R1P-201ENST00000441524 1141 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 RNA5SP395-201ENST00000516567 118 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 LARP7P2-201ENST00000575306 125 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 MIR5708-201ENST00000579723 85 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC013553.2-201ENST00000604244 589 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC093838.1-201ENST00000613014 469 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC010975.3-201ENST00000618727 978 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AL159972.1-201ENST00000625150 448 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC110079.1-202ENST00000635213 138 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC135776.4-201ENST00000624300 1904 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 AC005832.2-201ENST00000538921 1430 ntBASIC1.81□□□□□ -2.12
SHANK3Q9BYB0 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 RNA5SP257-201ENST00000363023 116 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 RNU6-657P-201ENST00000383904 107 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC007742.1-201ENST00000425789 329 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC079780.1-201ENST00000428259 207 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 ELOCP26-201ENST00000436067 329 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 MTND1P9-201ENST00000453775 944 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AL359385.1-201ENST00000456509 365 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 MRPL42P6-201ENST00000486397 371 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 RNU6-405P-201ENST00000516637 110 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 CASP1P1-201ENST00000526345 212 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 MIR5000-201ENST00000577717 103 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC069545.1-201ENST00000605671 358 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC120349.2-201ENST00000625002 298 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 RPS3AP22-201ENST00000488297 769 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC087808.1-201ENST00000520501 361 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 MTCO1P47-201ENST00000523889 1271 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 SUB1P4-201ENST00000566062 339 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 DUXAP10-204ENST00000612052 616 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AP003476.1-201ENST00000623984 516 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC231657.1-201ENST00000624313 397 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 AC068880.5-201ENST00000624331 290 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 CDR1-202ENST00000625883 1485 ntBASIC1.8□□□□□ -2.12
SHANK3Q9BYB0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC009812.4-201ENST00000569134 1805 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AL596028.1-201ENST00000326971 197 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 RNU6-1122P-201ENST00000384449 107 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 RPS3AP24-201ENST00000407896 734 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC234775.1-201ENST00000454247 670 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC021382.1-201ENST00000483523 359 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 HMGB1P14-201ENST00000557424 591 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC099785.1-201ENST00000605697 437 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AC008669.1-201ENST00000565823 2178 ntBASIC1.79□□□□□ -2.12
SHANK3Q9BYB0 AL079343.1-201ENST00000572358 1771 ntBASIC1.78□□□□□ -2.12
SHANK3Q9BYB0 RNU1-105P-201ENST00000363470 161 ntBASIC1.78□□□□□ -2.12
SHANK3Q9BYB0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms