Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC084851.1-201ENST00000529105 249 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 UBL5P4-201ENST00000562584 236 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 MRPS21P9-201ENST00000571150 257 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 MIR4433B-201ENST00000581329 102 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 MIR4697-201ENST00000582977 78 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 DEFB117-201ENST00000602356 141 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 AL360181.4-201ENST00000621752 134 ntBASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC61Q9Y6R9 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC61Q9Y6R9 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 AP000756.2-201ENST00000624168 2567 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 Y_RNA.35-201ENST00000362601 101 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-1155P-201ENST00000363554 107 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 snoU2_19.4-201ENST00000364329 80 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNA5SP223-201ENST00000365174 120 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-245P-201ENST00000384020 107 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 Y_RNA.558-201ENST00000384685 113 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 MTHFD2P2-201ENST00000407725 247 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 SSXP9-201ENST00000417503 292 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 LAMTOR3P1-201ENST00000428620 370 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 AC091390.1-201ENST00000433904 331 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RPL23AP56-201ENST00000460778 453 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNA5SP471-201ENST00000516971 106 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 DNM1P47-203ENST00000571780 12667 ntBASIC6.89□□□□□ -1.31
CCDC61Q9Y6R9 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AC069528.2-201ENST00000624849 1991 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-643P-201ENST00000384018 107 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-159P-201ENST00000391080 106 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AL121914.1-201ENST00000450188 156 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RN7SL441P-201ENST00000492388 296 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AF186996.7-201ENST00000492781 209 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RNA5SP392-201ENST00000516905 112 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RNU2-60P-201ENST00000517290 128 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AC005868.1-201ENST00000536421 331 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 AC123786.2-201ENST00000603459 275 ntBASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC61Q9Y6R9 SMG1P7-201ENST00000565246 2704 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AP000547.3-204ENST00000588548 2523 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 SNORA8.3-201ENST00000384679 139 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 MIR548A3-201ENST00000385297 97 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-763P-201ENST00000390865 106 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 Y_RNA.584-201ENST00000391090 114 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 ABCC13-202ENST00000463099 3842 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AC098976.1-201ENST00000513014 541 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AC010265.1-201ENST00000513509 211 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-966P-201ENST00000516479 104 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 RNU6-1007P-201ENST00000516586 107 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AP001880.2-201ENST00000538233 448 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 RN7SL690P-201ENST00000582087 240 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 MIR5096-201ENST00000583713 70 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 CR381572.2-201ENST00000624852 397 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AL773545.4-201ENST00000637262 310 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AL513478.4-201ENST00000641636 310 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AC034229.2-201ENST00000566945 2508 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 AC026951.1-201ENST00000559530 2459 ntBASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC61Q9Y6R9 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms