Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC233263.6-201ENST00000631132 1963 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNA5SP432-201ENST00000362480 116 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-984P-201ENST00000363236 109 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.210-201ENST00000364161 110 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-1029P-201ENST00000384109 107 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-39P-201ENST00000384344 107 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 UBE2V1P2-201ENST00000397758 440 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC068533.1-201ENST00000418542 415 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC012065.2-201ENST00000421295 375 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MED13P1-201ENST00000428342 171 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL7P28-201ENST00000437739 740 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPS15AP1-201ENST00000457423 391 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC004801.2-202ENST00000463559 283 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC011979.2-201ENST00000527568 352 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RN7SL652P-201ENST00000577769 300 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR4472-2-201ENST00000582069 67 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC068790.3-201ENST00000602988 553 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC092447.9-201ENST00000603395 144 ntBASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CYCSP19-201ENST00000411715 316 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 BX323014.1-201ENST00000412876 237 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPS24P8-201ENST00000431490 402 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MTATP6P16-201ENST00000434543 526 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL031663.1-201ENST00000437445 219 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC114495.1-201ENST00000441274 436 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NANOGP10-201ENST00000453325 895 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC108751.2-201ENST00000469993 231 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PPIAP15-201ENST00000479662 484 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SCARNA22-201ENST00000503991 125 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC116562.3-201ENST00000506136 177 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC026784.1-201ENST00000507986 352 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 TXNP6-201ENST00000510190 310 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC025465.3-201ENST00000510570 311 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC068587.5-201ENST00000528506 175 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 DEFB109D-201ENST00000529497 240 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CDRT1-208ENST00000630868 794 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL512643.1-201ENST00000635735 524 ntBASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC6.19□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 BCLAF1P2-201ENST00000624956 2609 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.14-201ENST00000362415 103 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SNORA70F-201ENST00000384142 135 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL356421.1-201ENST00000403255 413 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL23AP74-201ENST00000437246 471 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL23AP89-201ENST00000439324 255 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC020550.1-201ENST00000447385 163 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL118520.1-201ENST00000450770 291 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL39P38-201ENST00000467018 153 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC008526.1-201ENST00000509149 338 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC116337.1-201ENST00000509680 687 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 IGHV3-76-201ENST00000522465 295 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR548AI-201ENST00000579940 88 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL355365.1-201ENST00000616480 294 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 FTX_2.1-201ENST00000618816 94 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SCARNA15.3-201ENST00000626315 122 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 225.2 ms