RNA–Protein interactions for RNA: ENST00000384344.1

RNU6-39P-201, Transcript of RNA, U6 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU6-39P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-39P-201ENST00000384344 AEBP2Q6ZN18 517 aaPredicted RBP16.97■□□□□ 0.31
RNU6-39P-201ENST00000384344 CHIC1Q5VXU3 224 aa16.74■□□□□ 0.27
RNU6-39P-201ENST00000384344 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
RNU6-39P-201ENST00000384344 SENP3Q9H4L4 574 aaPredicted RBP14.55□□□□□ -0.08
RNU6-39P-201ENST00000384344 PLPPR3Q6T4P5 718 aa13.7□□□□□ -0.22
RNU6-39P-201ENST00000384344 FOXD1Q16676 465 aa13.39□□□□□ -0.27
RNU6-39P-201ENST00000384344 POTEDQ86YR6 584 aa13.03□□□□□ -0.32
RNU6-39P-201ENST00000384344 ADRA2BP18089 450 aa12.93□□□□□ -0.34
RNU6-39P-201ENST00000384344 PPP6R1Q9UPN7 881 aa12.9□□□□□ -0.34
RNU6-39P-201ENST00000384344 PIAS4Q8N2W9 510 aaPredicted RBP12.72□□□□□ -0.37
RNU6-39P-201ENST00000384344 MSH5O43196 834 aa12.44□□□□□ -0.42
RNU6-39P-201ENST00000384344 PPP4R3CPQ6ZMV5 832 aa12.03□□□□□ -0.48
RNU6-39P-201ENST00000384344 SCAF1Q9H7N4 1312 aaKnown RBP12□□□□□ -0.49
RNU6-39P-201ENST00000384344 NCBP3Q53F19 620 aaKnown RBP11.85□□□□□ -0.51
RNU6-39P-201ENST00000384344 KCNA4P22459 653 aa11.8□□□□□ -0.52
RNU6-39P-201ENST00000384344 CNKSR2Q8WXI2 1034 aa11.72□□□□□ -0.53
RNU6-39P-201ENST00000384344 MAPK8IP2Q13387 824 aaPredicted RBP11.68□□□□□ -0.54
RNU6-39P-201ENST00000384344 DMRT2Q9Y5R5 561 aa11.58□□□□□ -0.56
RNU6-39P-201ENST00000384344 NPM3O75607 178 aaKnown RBP11.54□□□□□ -0.56
RNU6-39P-201ENST00000384344 RNF216Q9NWF9 866 aaPredicted RBP11.46□□□□□ -0.57
RNU6-39P-201ENST00000384344 HOXD11P31277 338 aaPredicted RBP11.36□□□□□ -0.59
RNU6-39P-201ENST00000384344 SLC4A1APQ9BWU0 796 aaKnown RBP11.33□□□□□ -0.6
RNU6-39P-201ENST00000384344 DNAJC5BQ9UF47 199 aa11.21□□□□□ -0.61
RNU6-39P-201ENST00000384344 DCAF8L1A6NGE4 600 aa11.15□□□□□ -0.62
RNU6-39P-201ENST00000384344 EHMT2Q96KQ7 1210 aa11.07□□□□□ -0.64
RNU6-39P-201ENST00000384344 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.9□□□□□ -0.66
RNU6-39P-201ENST00000384344 FOXD4L1Q9NU39 408 aa10.9□□□□□ -0.66
RNU6-39P-201ENST00000384344 SLC4A2P04920 1241 aa10.83□□□□□ -0.68
RNU6-39P-201ENST00000384344 CSRNP3Q8WYN3 585 aa10.83□□□□□ -0.68
RNU6-39P-201ENST00000384344 ZBTB22O15209 634 aa10.8□□□□□ -0.68
RNU6-39P-201ENST00000384344 CACNB1Q02641 598 aaPredicted RBP10.76□□□□□ -0.69
RNU6-39P-201ENST00000384344 MYCNP04198 464 aaPredicted RBP10.74□□□□□ -0.69
RNU6-39P-201ENST00000384344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.69□□□□□ -0.7
RNU6-39P-201ENST00000384344 HNRNPUL2Q1KMD3 747 aaKnown RBP10.69□□□□□ -0.7
RNU6-39P-201ENST00000384344 U3KPZ7 1027 aaPredicted RBP10.64□□□□□ -0.71
RNU6-39P-201ENST00000384344 APLP2Q06481 763 aa10.61□□□□□ -0.71
RNU6-39P-201ENST00000384344 SAMD1Q6SPF0 538 aaPredicted RBP10.61□□□□□ -0.71
RNU6-39P-201ENST00000384344 RNF39Q9H2S5 420 aa10.59□□□□□ -0.71
RNU6-39P-201ENST00000384344 ATXN8OSP0DMR3 200 aa10.55□□□□□ -0.72
RNU6-39P-201ENST00000384344 C1QBPQ07021 282 aaKnown RBP10.53□□□□□ -0.72
RNU6-39P-201ENST00000384344 CAPN15O75808 1086 aa10.36□□□□□ -0.75
RNU6-39P-201ENST00000384344 ZNF219Q9P2Y4 722 aaPredicted RBP10.36□□□□□ -0.75
RNU6-39P-201ENST00000384344 TRHP20396 242 aaPredicted RBP10.31□□□□□ -0.76
RNU6-39P-201ENST00000384344 ATF5Q9Y2D1 282 aaPredicted RBP10.31□□□□□ -0.76
RNU6-39P-201ENST00000384344 SPINK5Q9NQ38 1064 aaPredicted RBP10.3□□□□□ -0.76
RNU6-39P-201ENST00000384344 POLA2Q14181 598 aa10.14□□□□□ -0.79
RNU6-39P-201ENST00000384344 ABCB7O75027 752 aa10.12□□□□□ -0.79
RNU6-39P-201ENST00000384344 DSG3P32926 999 aa10.09□□□□□ -0.79
RNU6-39P-201ENST00000384344 ZBTB12Q9Y330 459 aaPredicted RBP10.09□□□□□ -0.79
RNU6-39P-201ENST00000384344 FBLN2P98095 1184 aa10.07□□□□□ -0.8
RNU6-39P-201ENST00000384344 POTEHQ6S545 545 aa10.05□□□□□ -0.8
RNU6-39P-201ENST00000384344 MKRN4PQ13434 485 aaPredicted RBP9.88□□□□□ -0.83
RNU6-39P-201ENST00000384344 FKBP8Q14318 412 aa9.86□□□□□ -0.83
RNU6-39P-201ENST00000384344 SPDYE4A6NLX3 237 aa9.8□□□□□ -0.84
RNU6-39P-201ENST00000384344 OSCARQ8IYS5 282 aa9.78□□□□□ -0.84
RNU6-39P-201ENST00000384344 SPDYE2BA6NHP3 402 aa9.76□□□□□ -0.85
RNU6-39P-201ENST00000384344 SPDYE6P0CI01 402 aa9.76□□□□□ -0.85
RNU6-39P-201ENST00000384344 SPDYE2Q495Y8 402 aa9.76□□□□□ -0.85
RNU6-39P-201ENST00000384344 RBM42Q9BTD8 480 aaKnown RBP9.75□□□□□ -0.85
RNU6-39P-201ENST00000384344 ZNF692Q9BU19 519 aaPredicted RBP9.73□□□□□ -0.85
RNU6-39P-201ENST00000384344 SSUH2Q9Y2M2 353 aa9.63□□□□□ -0.87
RNU6-39P-201ENST00000384344 FBXO3Q9UK99 471 aa9.59□□□□□ -0.87
RNU6-39P-201ENST00000384344 PABPN1Q86U42 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
RNU6-39P-201ENST00000384344 PROM2Q8N271 834 aa9.58□□□□□ -0.88
RNU6-39P-201ENST00000384344 AKT1S1Q96B36 256 aa9.58□□□□□ -0.88
RNU6-39P-201ENST00000384344 STAG3Q9UJ98 1225 aa9.52□□□□□ -0.89
RNU6-39P-201ENST00000384344 SPDYE1Q8NFV5 336 aaPredicted RBP9.47□□□□□ -0.89
RNU6-39P-201ENST00000384344 REM2Q8IYK8 340 aaPredicted RBP9.45□□□□□ -0.9
RNU6-39P-201ENST00000384344 CLEC11AQ9Y240 323 aa9.4□□□□□ -0.9
RNU6-39P-201ENST00000384344 PLEKHG5O94827 1062 aa9.37□□□□□ -0.91
RNU6-39P-201ENST00000384344 VASPP50552 380 aaPredicted RBP9.37□□□□□ -0.91
RNU6-39P-201ENST00000384344 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
RNU6-39P-201ENST00000384344 PITPNM1O00562 1244 aa9.33□□□□□ -0.92
RNU6-39P-201ENST00000384344 PLCD3Q8N3E9 789 aa9.33□□□□□ -0.92
RNU6-39P-201ENST00000384344 MIER1Q8N108 512 aa9.32□□□□□ -0.92
RNU6-39P-201ENST00000384344 ZBTB47Q9UFB7 747 aaPredicted RBP9.28□□□□□ -0.92
RNU6-39P-201ENST00000384344 KLHL34Q8N239 644 aa9.26□□□□□ -0.93
RNU6-39P-201ENST00000384344 CHRDL2Q6WN34 429 aa9.23□□□□□ -0.93
RNU6-39P-201ENST00000384344 AMER1Q5JTC6 1135 aaPredicted RBP9.19□□□□□ -0.94
RNU6-39P-201ENST00000384344 IFNLR1Q8IU57 520 aaPredicted RBP9.19□□□□□ -0.94
RNU6-39P-201ENST00000384344 SPOCK2Q92563 424 aa9.16□□□□□ -0.94
RNU6-39P-201ENST00000384344 CREBZFQ9NS37 354 aa9.16□□□□□ -0.94
RNU6-39P-201ENST00000384344 NPM1P06748 294 aaKnown RBP eCLIP9.14□□□□□ -0.95
RNU6-39P-201ENST00000384344 PRKAR2AP13861 404 aaKnown RBP9.13□□□□□ -0.95
RNU6-39P-201ENST00000384344 FXR2P51116 673 aaKnown RBP eCLIP9.13□□□□□ -0.95
RNU6-39P-201ENST00000384344 CHADLQ6NUI6 762 aa9.1□□□□□ -0.95
RNU6-39P-201ENST00000384344 PIP4P2Q8N4L2 257 aa9.1□□□□□ -0.95
RNU6-39P-201ENST00000384344 SP7Q8TDD2 431 aaPredicted RBP9.09□□□□□ -0.95
RNU6-39P-201ENST00000384344 FARP1Q9Y4F1 1045 aaPredicted RBP9.06□□□□□ -0.96
RNU6-39P-201ENST00000384344 RTN4Q9NQC3 1192 aaKnown RBP9.04□□□□□ -0.96
RNU6-39P-201ENST00000384344 MNX1P50219 401 aaPredicted RBP9.03□□□□□ -0.96
RNU6-39P-201ENST00000384344 FAM212AQ96EL1 285 aa9.03□□□□□ -0.96
RNU6-39P-201ENST00000384344 CIZ1Q9ULV3 898 aaPredicted RBP9.02□□□□□ -0.97
RNU6-39P-201ENST00000384344 GSE1Q14687 1217 aa9.01□□□□□ -0.97
RNU6-39P-201ENST00000384344 PAK3O75914 559 aaPredicted RBP8.99□□□□□ -0.97
RNU6-39P-201ENST00000384344 NUBP1P53384 320 aa8.98□□□□□ -0.97
RNU6-39P-201ENST00000384344 DCAF8Q5TAQ9 597 aa8.98□□□□□ -0.97
RNU6-39P-201ENST00000384344 TRIM41Q8WV44 630 aa8.97□□□□□ -0.97
RNU6-39P-201ENST00000384344 RASEFQ8IZ41 740 aa8.94□□□□□ -0.98
RNU6-39P-201ENST00000384344 ECM2O94769 699 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms