Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC069200.1-201ENST00000609511 323 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 THUMPD3P1-201ENST00000506556 1480 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 CDC27P3-201ENST00000635418 1910 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC092125.1-201ENST00000562568 1995 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL031595.2-201ENST00000624215 19071 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL079305.1-201ENST00000623159 3008 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SNORD113-7-201ENST00000363762 77 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNU6-1151P-201ENST00000384684 107 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNA5SP113-201ENST00000410486 84 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.646-201ENST00000410980 101 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TPMTP2-201ENST00000414372 726 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 EIF4HP2-201ENST00000424380 563 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPS20P5-201ENST00000434808 360 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ALDH7A1P3-201ENST00000492517 345 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNA5SP337-201ENST00000517007 109 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL23AP53-201ENST00000521854 457 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 GNAI2P1-201ENST00000541815 315 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 HSPE1P3-201ENST00000559254 309 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC124068.1-201ENST00000563131 678 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL356432.3-201ENST00000568952 465 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL512782.1-201ENST00000603093 364 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC010424.2-201ENST00000607594 443 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL669831.3-213ENST00000636676 183 ntBASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNU4-7P-201ENST00000364758 141 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.389-201ENST00000383924 113 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL109755.1-201ENST00000401791 649 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MIR548I2-201ENST00000408348 149 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC233981.1-201ENST00000423224 461 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPS12P10-201ENST00000427031 377 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC002553.2-201ENST00000453217 340 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL21P71-201ENST00000465598 459 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL7P49-201ENST00000471402 708 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 EEF1A1P25-201ENST00000495704 1267 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RN7SL558P-201ENST00000497468 299 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 HMGB3P16-201ENST00000508037 287 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ENPP7P9-201ENST00000514456 627 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RFPL4AP3-201ENST00000515267 345 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RN7SKP219-201ENST00000516825 296 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AP000857.1-201ENST00000532151 543 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 OR8R1P-201ENST00000543943 764 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL21P12-201ENST00000559810 515 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 BBIP1P1-201ENST00000602999 279 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 FAM27B-201ENST00000610601 213 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC015914.2-201ENST00000618167 288 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TLK1P1-201ENST00000456760 2440 ntBASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC093311.1-201ENST00000506586 2021 ntBASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.212-201ENST00000364177 102 ntBASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNU6-853P-201ENST00000364306 107 ntBASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.367-201ENST00000365544 101 ntBASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SNORA75B-201ENST00000384053 137 ntBASIC6.35□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MIR491-201ENST00000384877 84 ntBASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms