Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 MIR4648-201ENST00000580107 72 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 U7.8-201ENST00000619968 63 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AP003072.5-201ENST00000623872 773 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 CDC27P2-201ENST00000425026 1922 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 TAB3P1-202ENST00000452645 1634 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 RNU1-35P-201ENST00000362782 153 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 U3.6-201ENST00000363622 211 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 Y_RNA.338-201ENST00000365320 114 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 RPS4XP7-201ENST00000406274 780 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 MTCO1P51-201ENST00000427672 1060 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 OR2AS1P-201ENST00000427827 319 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 RPL9P32-201ENST00000464118 620 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 RPL23AP11-201ENST00000475260 469 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 GAPDHP39-201ENST00000481866 979 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC009101.1-201ENST00000568135 242 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 DNAJC19P3-201ENST00000594491 331 ntBASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.58□□□□□ -1.84
SHANK3Q9BYB0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 AL161781.1-201ENST00000354277 403 ntBASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 RNU6-76P-201ENST00000384060 104 ntBASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 RN7SL633P-201ENST00000488974 297 ntBASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 AC092851.1-201ENST00000535964 478 ntBASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
SHANK3Q9BYB0 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 MIR7-2-201ENST00000384970 110 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 SKINT1L-201ENST00000401057 817 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 CYCSP45-201ENST00000402289 315 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AC245054.2-201ENST00000415639 319 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AL139415.2-201ENST00000431968 163 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AC107015.1-201ENST00000466902 747 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AC093663.2-201ENST00000484625 313 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 RNA5SP148-201ENST00000516527 94 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 SNORA64.4-201ENST00000516632 81 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AC022960.2-201ENST00000616300 666 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AC005539.1-201ENST00000443768 1479 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 RNA5SP425-201ENST00000410336 112 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AP000936.3-201ENST00000438127 255 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 RN7SL330P-201ENST00000469709 307 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 RFPL1S-203ENST00000539579 330 ntBASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
SHANK3Q9BYB0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 MIR489-201ENST00000384923 84 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 RNU4-26P-201ENST00000410270 107 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AL049610.1-201ENST00000423374 372 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AC009414.1-201ENST00000427200 443 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 RPL21P99-201ENST00000480369 423 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 AC015849.6-201ENST00000605454 474 ntBASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.55□□□□□ -1.84
SHANK3Q9BYB0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 RPS29P6-201ENST00000438196 145 ntBASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 AL513043.1-201ENST00000439124 535 ntBASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms