Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM1O15116 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.59■□□□□ 0.57
LSM1O15116 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.59■□□□□ 0.57
LSM1O15116 AC097658.1-201ENST00000475555 843 ntBASIC18.59■□□□□ 0.57
LSM1O15116 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM1O15116 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LSM1O15116 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.59■□□□□ 0.57
LSM1O15116 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
LSM1O15116 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LSM1O15116 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LSM1O15116 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.58■□□□□ 0.57
LSM1O15116 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
LSM1O15116 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LSM1O15116 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.58■□□□□ 0.57
LSM1O15116 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.58■□□□□ 0.57
LSM1O15116 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.58■□□□□ 0.57
LSM1O15116 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LSM1O15116 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LSM1O15116 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.58■□□□□ 0.56
LSM1O15116 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.58■□□□□ 0.56
LSM1O15116 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LSM1O15116 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
LSM1O15116 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LSM1O15116 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LSM1O15116 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.57■□□□□ 0.56
LSM1O15116 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.57■□□□□ 0.56
LSM1O15116 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.57■□□□□ 0.56
LSM1O15116 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.57■□□□□ 0.56
LSM1O15116 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 MIR935-201ENST00000401179 91 ntBASIC18.57■□□□□ 0.56
LSM1O15116 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.57■□□□□ 0.56
LSM1O15116 PNMA6B-201ENST00000538162 1200 ntBASIC18.57■□□□□ 0.56
LSM1O15116 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.57■□□□□ 0.56
LSM1O15116 AC060766.5-201ENST00000590539 871 ntBASIC18.57■□□□□ 0.56
LSM1O15116 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.57■□□□□ 0.56
LSM1O15116 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
LSM1O15116 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.57■□□□□ 0.56
LSM1O15116 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
LSM1O15116 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.57■□□□□ 0.56
LSM1O15116 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LSM1O15116 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LSM1O15116 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LSM1O15116 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LSM1O15116 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
LSM1O15116 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.56■□□□□ 0.56
LSM1O15116 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.56■□□□□ 0.56
LSM1O15116 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.56■□□□□ 0.56
LSM1O15116 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.56■□□□□ 0.56
LSM1O15116 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LSM1O15116 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
LSM1O15116 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.55■□□□□ 0.56
LSM1O15116 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LSM1O15116 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 AC098934.4-201ENST00000564127 592 ntBASIC18.55■□□□□ 0.56
LSM1O15116 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms