Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
COPB1P53618 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.21■□□□□ 0.99
COPB1P53618 AL137784.2-201ENST00000607332 1000 ntBASIC21.21■□□□□ 0.99
COPB1P53618 AC092118.2-201ENST00000613495 667 ntBASIC21.21■□□□□ 0.99
COPB1P53618 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.21■□□□□ 0.99
COPB1P53618 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COPB1P53618 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.21■□□□□ 0.99
COPB1P53618 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COPB1P53618 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.2■□□□□ 0.99
COPB1P53618 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COPB1P53618 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.2■□□□□ 0.98
COPB1P53618 AC083906.2-201ENST00000511578 360 ntBASIC21.2■□□□□ 0.98
COPB1P53618 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.2■□□□□ 0.98
COPB1P53618 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 AL121832.2-201ENST00000610979 668 ntBASIC21.2■□□□□ 0.98
COPB1P53618 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.2■□□□□ 0.98
COPB1P53618 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.2■□□□□ 0.98
COPB1P53618 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.2■□□□□ 0.98
COPB1P53618 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COPB1P53618 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.19■□□□□ 0.98
COPB1P53618 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.19■□□□□ 0.98
COPB1P53618 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.19■□□□□ 0.98
COPB1P53618 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
COPB1P53618 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COPB1P53618 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COPB1P53618 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COPB1P53618 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.19■□□□□ 0.98
COPB1P53618 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.19■□□□□ 0.98
COPB1P53618 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.18■□□□□ 0.98
COPB1P53618 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.18■□□□□ 0.98
COPB1P53618 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COPB1P53618 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
COPB1P53618 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.18■□□□□ 0.98
COPB1P53618 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.18■□□□□ 0.98
COPB1P53618 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.18■□□□□ 0.98
COPB1P53618 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COPB1P53618 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.18■□□□□ 0.98
COPB1P53618 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.18■□□□□ 0.98
COPB1P53618 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.18■□□□□ 0.98
COPB1P53618 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COPB1P53618 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
COPB1P53618 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.17■□□□□ 0.98
COPB1P53618 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.17■□□□□ 0.98
COPB1P53618 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.17■□□□□ 0.98
COPB1P53618 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COPB1P53618 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COPB1P53618 KRT8P8-201ENST00000434750 1448 ntBASIC21.17■□□□□ 0.98
COPB1P53618 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COPB1P53618 AP006587.1-201ENST00000534129 1502 ntBASIC21.17■□□□□ 0.98
COPB1P53618 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COPB1P53618 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms