Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 AC080038.1-201ENST00000611274 1154 ntBASIC18.86■□□□□ 0.61
LSM1O15116 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.86■□□□□ 0.61
LSM1O15116 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LSM1O15116 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LSM1O15116 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LSM1O15116 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.85■□□□□ 0.61
LSM1O15116 MKRN4P-201ENST00000444706 1521 ntBASIC18.85■□□□□ 0.61
LSM1O15116 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 AC004408.2-201ENST00000623613 2777 ntBASIC18.85■□□□□ 0.61
LSM1O15116 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
LSM1O15116 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.85■□□□□ 0.61
LSM1O15116 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.85■□□□□ 0.61
LSM1O15116 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.85■□□□□ 0.61
LSM1O15116 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LSM1O15116 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.85■□□□□ 0.61
LSM1O15116 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LSM1O15116 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.84■□□□□ 0.61
LSM1O15116 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LSM1O15116 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LSM1O15116 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.84■□□□□ 0.61
LSM1O15116 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LSM1O15116 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.84■□□□□ 0.61
LSM1O15116 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 CDCA4P2-201ENST00000441182 718 ntBASIC18.84■□□□□ 0.61
LSM1O15116 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LSM1O15116 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.84■□□□□ 0.61
LSM1O15116 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.84■□□□□ 0.61
LSM1O15116 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LSM1O15116 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LSM1O15116 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LSM1O15116 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LSM1O15116 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.84■□□□□ 0.61
LSM1O15116 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LSM1O15116 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LSM1O15116 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LSM1O15116 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LSM1O15116 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.83■□□□□ 0.61
LSM1O15116 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM1O15116 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM1O15116 AF201337.1-201ENST00000520239 748 ntBASIC18.83■□□□□ 0.6
LSM1O15116 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.83■□□□□ 0.6
LSM1O15116 AC105036.2-201ENST00000569468 176 ntBASIC18.83■□□□□ 0.6
LSM1O15116 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.83■□□□□ 0.6
LSM1O15116 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM1O15116 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.83■□□□□ 0.6
LSM1O15116 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.83■□□□□ 0.6
LSM1O15116 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LSM1O15116 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LSM1O15116 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
LSM1O15116 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
LSM1O15116 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.82■□□□□ 0.6
LSM1O15116 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.82■□□□□ 0.6
LSM1O15116 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 BX276092.2-201ENST00000417668 665 ntBASIC18.82■□□□□ 0.6
LSM1O15116 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.82■□□□□ 0.6
LSM1O15116 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.82■□□□□ 0.6
LSM1O15116 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.82■□□□□ 0.6
LSM1O15116 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LSM1O15116 IKBKGP1-201ENST00000612193 1073 ntBASIC18.82■□□□□ 0.6
LSM1O15116 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LSM1O15116 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms