Protein–RNA interactions for Protein: Q08285

RRP40, Exosome complex component RRP40, yeastyeast

Known RBP Predictions only

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RRP40Q08285 snR33snR33 183 nt-0.7□□□□□ -2.52
RRP40Q08285 YHL009W-BYHL009W-B 5409 nt-0.71□□□□□ -2.52
RRP40Q08285 YNL067W-BYNL067W-B 141 nt-0.71□□□□□ -2.52
RRP40Q08285 tQ(UUG)QtQ(UUG)Q 76 nt-0.72□□□□□ -2.52
RRP40Q08285 snR49snR49 165 nt-0.73□□□□□ -2.53
RRP40Q08285 YOR170WYOR170W 306 nt-0.74□□□□□ -2.53
RRP40Q08285 YHR175W-AYHR175W-A 150 nt-0.75□□□□□ -2.53
RRP40Q08285 tM(CAU)Q2tM(CAU)Q2 78 nt-0.76□□□□□ -2.53
RRP40Q08285 snR69snR69 101 nt-0.77□□□□□ -2.53
RRP40Q08285 snR65snR65 100 nt-0.79□□□□□ -2.54
RRP40Q08285 YGR146C-AYGR146C-A 162 nt-0.79□□□□□ -2.54
RRP40Q08285 YNL097C-BYNL097C-B 123 nt-0.79□□□□□ -2.54
RRP40Q08285 YOL155W-AYOL155W-A 135 nt-0.79□□□□□ -2.54
RRP40Q08285 snR161snR161 161 nt-0.81□□□□□ -2.54
RRP40Q08285 YER090C-AYER090C-A 90 nt-0.82□□□□□ -2.54
RRP40Q08285 snR39BsnR39B 96 nt-0.82□□□□□ -2.54
RRP40Q08285 tR(ACG)Q2tR(ACG)Q2 74 nt-0.83□□□□□ -2.54
RRP40Q08285 snR56snR56 88 nt-0.84□□□□□ -2.54
RRP40Q08285 PMP2YEL017C-A 132 nt-0.85□□□□□ -2.55
RRP40Q08285 YPL152W-AYPL152W-A 99 nt-0.85□□□□□ -2.55
RRP40Q08285 YOR302WYOR302W 78 nt-0.86□□□□□ -2.55
RRP40Q08285 RDS3YPR094W 324 nt-0.86□□□□□ -2.55
RRP40Q08285 YOR329W-AYOR329W-A 210 nt-0.87□□□□□ -2.55
RRP40Q08285 YNL266WYNL266W 420 nt-0.9□□□□□ -2.55
RRP40Q08285 snR50snR50 90 nt-0.9□□□□□ -2.55
RRP40Q08285 YBR223W-AYBR223W-A 120 nt-0.92□□□□□ -2.56
RRP40Q08285 YGL188C-AYGL188C-A 141 nt-0.96□□□□□ -2.56
RRP40Q08285 JLP2YMR132C 627 nt-0.96□□□□□ -2.56
RRP40Q08285 tD(GUC)QtD(GUC)Q 75 nt-0.98□□□□□ -2.57
RRP40Q08285 snR48snR48 113 nt-0.99□□□□□ -2.57
RRP40Q08285 YOR231C-AYOR231C-A 201 nt-1.02□□□□□ -2.57
RRP40Q08285 YDR524W-CYDR524W-C 90 nt-1.04□□□□□ -2.58
RRP40Q08285 YNL205CYNL205C 423 nt-1.04□□□□□ -2.58
RRP40Q08285 snR52snR52 92 nt-1.04□□□□□ -2.58
RRP40Q08285 YLR286W-AYLR286W-A 135 nt-1.05□□□□□ -2.58
RRP40Q08285 YLR342W-AYLR342W-A 174 nt-1.06□□□□□ -2.58
RRP40Q08285 snR67snR67 82 nt-1.09□□□□□ -2.58
RRP40Q08285 YBR178WYBR178W 375 nt-1.1□□□□□ -2.59
RRP40Q08285 tL(UAA)QtL(UAA)Q 85 nt-1.11□□□□□ -2.59
RRP40Q08285 snR80snR80 171 nt-1.12□□□□□ -2.59
RRP40Q08285 YDL159C-BYDL159C-B 177 nt-1.12□□□□□ -2.59
RRP40Q08285 tP(UGG)QtP(UGG)Q 72 nt-1.12□□□□□ -2.59
RRP40Q08285 YOR102WYOR102W 351 nt-1.13□□□□□ -2.59
RRP40Q08285 SKI7YOR076C 2244 nt-1.16□□□□□ -2.59
RRP40Q08285 YNR077CYNR077C 255 nt-1.22□□□□□ -2.6
RRP40Q08285 YHL015W-AYHL015W-A 84 nt-1.23□□□□□ -2.61
RRP40Q08285 YLR299C-AYLR299C-A 93 nt-1.29□□□□□ -2.62
RRP40Q08285 YBR196C-AYBR196C-A 150 nt-1.33□□□□□ -2.62
RRP40Q08285 YDR406W-AYDR406W-A 246 nt-1.34□□□□□ -2.62
RRP40Q08285 tY(GUA)QtY(GUA)Q 84 nt-1.34□□□□□ -2.62
RRP40Q08285 YML054C-AYML054C-A 159 nt-1.35□□□□□ -2.63
RRP40Q08285 YNL198CYNL198C 303 nt-1.37□□□□□ -2.63
RRP40Q08285 YJL150WYJL150W 303 nt-1.47□□□□□ -2.64
RRP40Q08285 SOM1YEL059C-A 225 nt-1.52□□□□□ -2.65
RRP40Q08285 YBL053WYBL053W 375 nt-1.52□□□□□ -2.65
RRP40Q08285 YHR180C-BYHR180C-B 105 nt-1.55□□□□□ -2.66
RRP40Q08285 YGR240C-AYGR240C-A 201 nt-1.56□□□□□ -2.66
RRP40Q08285 YCR095W-AYCR095W-A 159 nt-1.57□□□□□ -2.66
RRP40Q08285 CDC65tQ(CUG)M 72 nt-1.58□□□□□ -2.66
RRP40Q08285 YMR046W-AYMR046W-A 129 nt-1.58□□□□□ -2.66
RRP40Q08285 snR77snR77 88 nt-1.59□□□□□ -2.66
RRP40Q08285 YOR376W-AYOR376W-A 156 nt-1.62□□□□□ -2.67
RRP40Q08285 Q0142Q0142 177 nt-1.63□□□□□ -2.67
RRP40Q08285 YBR126W-BYBR126W-B 144 nt-1.68□□□□□ -2.68
RRP40Q08285 YMR315W-AYMR315W-A 108 nt-1.69□□□□□ -2.68
RRP40Q08285 snR81snR81 201 nt-1.72□□□□□ -2.68
RRP40Q08285 SPG3YDR504C 384 nt-1.74□□□□□ -2.69
RRP40Q08285 YOR316C-AYOR316C-A 210 nt-1.79□□□□□ -2.7
RRP40Q08285 YKL106C-AYKL106C-A 120 nt-1.8□□□□□ -2.7
RRP40Q08285 YGR151CYGR151C 336 nt-1.83□□□□□ -2.7
RRP40Q08285 tM(CAU)Q1tM(CAU)Q1 76 nt-1.84□□□□□ -2.7
RRP40Q08285 YBR109W-AYBR109W-A 225 nt-1.84□□□□□ -2.7
RRP40Q08285 RPL41AYDL184C 78 nt-1.86□□□□□ -2.71
RRP40Q08285 YBR296C-AYBR296C-A 120 nt-1.86□□□□□ -2.71
RRP40Q08285 YBL071C-BYBL071C-B 99 nt-1.91□□□□□ -2.72
RRP40Q08285 YOL083C-AYOL083C-A 141 nt-1.91□□□□□ -2.72
RRP40Q08285 YLR466C-BYLR466C-B 117 nt-1.94□□□□□ -2.72
RRP40Q08285 YOL164W-AYOL164W-A 183 nt-1.95□□□□□ -2.72
RRP40Q08285 snR38snR38 95 nt-1.96□□□□□ -2.72
RRP40Q08285 YCL001W-BYCL001W-B 255 nt-1.96□□□□□ -2.72
RRP40Q08285 YAL037C-AYAL037C-A 93 nt-2.03□□□□□ -2.73
RRP40Q08285 YOR309CYOR309C 381 nt-2.06□□□□□ -2.74
RRP40Q08285 YNL338WYNL338W 159 nt-2.08□□□□□ -2.74
RRP40Q08285 snR47snR47 99 nt-2.1□□□□□ -2.75
RRP40Q08285 YDR543CYDR543C 300 nt-2.11□□□□□ -2.75
RRP40Q08285 YBL100W-CYBL100W-C 120 nt-2.16□□□□□ -2.76
RRP40Q08285 YNL337WYNL337W 255 nt-2.23□□□□□ -2.77
RRP40Q08285 snR6snR6 112 nt-2.34□□□□□ -2.78
RRP40Q08285 YKL225WYKL225W 348 nt-2.35□□□□□ -2.79
RRP40Q08285 tS(GCU)Q1tS(GCU)Q1 86 nt-2.37□□□□□ -2.79
RRP40Q08285 Q0032Q0032 291 nt-2.41□□□□□ -2.8
RRP40Q08285 RPL41BYDL133C-A 78 nt-2.43□□□□□ -2.8
RRP40Q08285 YOL166W-AYOL166W-A 156 nt-2.48□□□□□ -2.81
RRP40Q08285 YGL007C-AYGL007C-A 87 nt-2.49□□□□□ -2.81
RRP40Q08285 tV(UAC)QtV(UAC)Q 76 nt-2.51□□□□□ -2.81
RRP40Q08285 YOR335W-AYOR335W-A 81 nt-2.51□□□□□ -2.81
RRP40Q08285 YDL114W-AYDL114W-A 114 nt-2.52□□□□□ -2.81
RRP40Q08285 YGL041C-BYGL041C-B 183 nt-2.53□□□□□ -2.81
RRP40Q08285 YNL103W-AYNL103W-A 90 nt-2.55□□□□□ -2.82
RRP40Q08285 snR73snR73 106 nt-2.57□□□□□ -2.82
Retrieved 100 of 7,029 protein–RNA pairs in 7.1 ms