Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ABCA4P78363 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.18■□□□□ 0.34
ABCA4P78363 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ABCA4P78363 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ABCA4P78363 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
ABCA4P78363 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.17■□□□□ 0.34
ABCA4P78363 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.17■□□□□ 0.34
ABCA4P78363 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 AC073508.3-201ENST00000619697 1419 ntBASIC17.17■□□□□ 0.34
ABCA4P78363 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
ABCA4P78363 AC010947.1-201ENST00000623454 693 ntBASIC17.17■□□□□ 0.34
ABCA4P78363 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
ABCA4P78363 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.16■□□□□ 0.34
ABCA4P78363 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
ABCA4P78363 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.16■□□□□ 0.34
ABCA4P78363 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.16■□□□□ 0.34
ABCA4P78363 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 NIFKP9-201ENST00000419265 221 ntBASIC17.16■□□□□ 0.34
ABCA4P78363 UPK3BP1-201ENST00000428678 509 ntBASIC17.16■□□□□ 0.34
ABCA4P78363 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.16■□□□□ 0.34
ABCA4P78363 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
ABCA4P78363 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
ABCA4P78363 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 MMP23A-201ENST00000234610 1017 ntBASIC17.16■□□□□ 0.34
ABCA4P78363 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ABCA4P78363 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.16■□□□□ 0.34
ABCA4P78363 AC026271.3-201ENST00000571884 352 ntBASIC17.16■□□□□ 0.34
ABCA4P78363 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.16■□□□□ 0.34
ABCA4P78363 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
ABCA4P78363 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
ABCA4P78363 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ABCA4P78363 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
ABCA4P78363 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 FITM1-202ENST00000559294 800 ntBASIC17.15■□□□□ 0.34
ABCA4P78363 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.15■□□□□ 0.34
ABCA4P78363 LINC01568-207ENST00000641790 1380 ntBASIC17.15■□□□□ 0.34
ABCA4P78363 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ABCA4P78363 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
ABCA4P78363 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.15■□□□□ 0.34
ABCA4P78363 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ABCA4P78363 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.34
ABCA4P78363 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.14■□□□□ 0.34
ABCA4P78363 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ABCA4P78363 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ABCA4P78363 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
ABCA4P78363 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 FEM1AP4-201ENST00000443167 1987 ntBASIC17.14■□□□□ 0.33
ABCA4P78363 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms