Protein–RNA interactions for Protein: P53899

CUZ1, CDC48-associated ubiquitin-like/zinc finger protein 1, yeastyeast

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUZ1P53899 YLL006W-AYLL006W-A 177 nt1.58□□□□□ -2.16
CUZ1P53899 TMA7YLR262C-A 195 nt1.57□□□□□ -2.16
CUZ1P53899 CDC39YCR093W 6327 nt1.56□□□□□ -2.16
CUZ1P53899 BST1YFL025C 3090 nt1.55□□□□□ -2.16
CUZ1P53899 CFT1YDR301W 4074 nt1.53□□□□□ -2.16
CUZ1P53899 CAT8YMR280C 4302 nt1.52□□□□□ -2.17
CUZ1P53899 MYO1YHR023W 5787 nt1.51□□□□□ -2.17
CUZ1P53899 LAA1YJL207C 6045 nt1.49□□□□□ -2.17
CUZ1P53899 YER090C-AYER090C-A 90 nt1.48□□□□□ -2.17
CUZ1P53899 VPS15YBR097W 4365 nt1.47□□□□□ -2.17
CUZ1P53899 NUP192YJL039C 5052 nt1.45□□□□□ -2.18
CUZ1P53899 tT(UGU)HtT(UGU)H 72 nt1.44□□□□□ -2.18
CUZ1P53899 YGR130CYGR130C 2451 nt1.43□□□□□ -2.18
CUZ1P53899 SSK2YNR031C 4740 nt1.43□□□□□ -2.18
CUZ1P53899 CLU1YMR012W 3834 nt1.42□□□□□ -2.18
CUZ1P53899 YMR247W-AYMR247W-A 144 nt1.42□□□□□ -2.18
CUZ1P53899 MEC1YBR136W 7107 nt1.42□□□□□ -2.18
CUZ1P53899 BRR2YER172C 6492 nt1.41□□□□□ -2.18
CUZ1P53899 YNL054W-BYNL054W-B 5250 nt1.36□□□□□ -2.19
CUZ1P53899 SPT7YBR081C 3999 nt1.36□□□□□ -2.19
CUZ1P53899 snR67snR67 82 nt1.35□□□□□ -2.19
CUZ1P53899 YDL114W-AYDL114W-A 114 nt1.33□□□□□ -2.2
CUZ1P53899 IRA1YBR140C 9279 nt1.32□□□□□ -2.2
CUZ1P53899 YOR376W-AYOR376W-A 156 nt1.31□□□□□ -2.2
CUZ1P53899 CCH1YGR217W 6120 nt1.3□□□□□ -2.2
CUZ1P53899 YNL284C-BYNL284C-B 5268 nt1.29□□□□□ -2.2
CUZ1P53899 SPC110YDR356W 2835 nt1.29□□□□□ -2.2
CUZ1P53899 YKL106C-AYKL106C-A 120 nt1.26□□□□□ -2.21
CUZ1P53899 BUD3YCL014W 4911 nt1.25□□□□□ -2.21
CUZ1P53899 HKR1YDR420W 5409 nt1.25□□□□□ -2.21
CUZ1P53899 tQ(UUG)E2tQ(UUG)E2 72 nt1.25□□□□□ -2.21
CUZ1P53899 VAM6YDL077C 3150 nt1.25□□□□□ -2.21
CUZ1P53899 YOR192C-BYOR192C-B 5313 nt1.24□□□□□ -2.21
CUZ1P53899 tV(UAC)QtV(UAC)Q 76 nt1.24□□□□□ -2.21
CUZ1P53899 MLP2YIL149C 5040 nt1.23□□□□□ -2.21
CUZ1P53899 tH(GUG)E1tH(GUG)E1 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)E2tH(GUG)E2 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)G1tH(GUG)G1 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)G2tH(GUG)G2 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)HtH(GUG)H 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)KtH(GUG)K 72 nt1.22□□□□□ -2.21
CUZ1P53899 tH(GUG)MtH(GUG)M 72 nt1.22□□□□□ -2.21
CUZ1P53899 YMR160WYMR160W 2451 nt1.2□□□□□ -2.22
CUZ1P53899 RKR1YMR247C 4689 nt1.2□□□□□ -2.22
CUZ1P53899 YPR117WYPR117W 7470 nt1.15□□□□□ -2.23
CUZ1P53899 snR40snR40 97 nt1.12□□□□□ -2.23
CUZ1P53899 tV(UAC)BtV(UAC)B 74 nt1.11□□□□□ -2.23
CUZ1P53899 tV(UAC)DtV(UAC)D 74 nt1.11□□□□□ -2.23
CUZ1P53899 IML1YJR138W 4755 nt1.1□□□□□ -2.23
CUZ1P53899 LTE1YAL024C 4308 nt1.07□□□□□ -2.24
CUZ1P53899 SCC2YDR180W 4482 nt1.05□□□□□ -2.24
CUZ1P53899 PAU24YBR301W 363 nt1.04□□□□□ -2.24
CUZ1P53899 YJR029WYJR029W 5268 nt1.02□□□□□ -2.25
CUZ1P53899 YPR137C-BYPR137C-B 5268 nt1.02□□□□□ -2.25
CUZ1P53899 YBL100W-BYBL100W-B 5313 nt1□□□□□ -2.25
CUZ1P53899 snR77snR77 88 nt0.93□□□□□ -2.26
CUZ1P53899 YOR316C-AYOR316C-A 210 nt0.92□□□□□ -2.26
CUZ1P53899 YML100W-AYML100W-A 174 nt0.88□□□□□ -2.27
CUZ1P53899 DOP1YDR141C 5097 nt0.87□□□□□ -2.27
CUZ1P53899 MLP1YKR095W 5628 nt0.87□□□□□ -2.27
CUZ1P53899 BEM2YER155C 6504 nt0.86□□□□□ -2.27
CUZ1P53899 SBH2YER019C-A 267 nt0.83□□□□□ -2.28
CUZ1P53899 YOR186C-AYOR186C-A 210 nt0.81□□□□□ -2.28
CUZ1P53899 EMT1tM(CAU)D 73 nt0.78□□□□□ -2.28
CUZ1P53899 EMT5tM(CAU)J1 73 nt0.78□□□□□ -2.28
CUZ1P53899 EMT3tM(CAU)J2 73 nt0.78□□□□□ -2.28
CUZ1P53899 EMT4tM(CAU)M 73 nt0.78□□□□□ -2.28
CUZ1P53899 EMT2tM(CAU)O2 73 nt0.78□□□□□ -2.28
CUZ1P53899 THO2YNL139C 4794 nt0.75□□□□□ -2.29
CUZ1P53899 SOV1YMR066W 2697 nt0.7□□□□□ -2.3
CUZ1P53899 IQG1YPL242C 4488 nt0.66□□□□□ -2.3
CUZ1P53899 tT(AGU)BtT(AGU)B 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)CtT(AGU)C 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)DtT(AGU)D 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)HtT(AGU)H 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)I1tT(AGU)I1 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)I2tT(AGU)I2 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)JtT(AGU)J 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)N1tT(AGU)N1 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)N2tT(AGU)N2 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)O1tT(AGU)O1 73 nt0.64□□□□□ -2.31
CUZ1P53899 tT(AGU)O2tT(AGU)O2 73 nt0.64□□□□□ -2.31
CUZ1P53899 YPR159C-AYPR159C-A 102 nt0.63□□□□□ -2.31
CUZ1P53899 ESP1YGR098C 4893 nt0.62□□□□□ -2.31
CUZ1P53899 tF(GAA)BtF(GAA)B 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)FtF(GAA)F 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)GtF(GAA)G 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)H1tF(GAA)H1 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)H2tF(GAA)H2 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)MtF(GAA)M 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)P1tF(GAA)P1 73 nt0.6□□□□□ -2.31
CUZ1P53899 tF(GAA)P2tF(GAA)P2 73 nt0.6□□□□□ -2.31
CUZ1P53899 PAU9YBL108C-A 129 nt0.6□□□□□ -2.31
CUZ1P53899 UTP10YJL109C 5310 nt0.6□□□□□ -2.31
CUZ1P53899 UTP20YBL004W 7482 nt0.58□□□□□ -2.32
CUZ1P53899 YMR272W-AYMR272W-A 114 nt0.53□□□□□ -2.32
CUZ1P53899 snR128snR128 126 nt0.52□□□□□ -2.33
CUZ1P53899 FMP27YLR454W 7887 nt0.51□□□□□ -2.33
CUZ1P53899 YKL145W-AYKL145W-A 93 nt0.49□□□□□ -2.33
CUZ1P53899 YOL014WYOL014W 375 nt0.44□□□□□ -2.34
Retrieved 100 of 7,029 protein–RNA pairs in 70.7 ms