Protein–RNA interactions for Protein: P25655

CDC39, General negative regulator of transcription subunit 1, yeastyeast

Known RBP Predictions only

Length 2,108 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC39P25655 snR189snR189 189 nt-1.26□□□□□ -2.61
CDC39P25655 PMP2YEL017C-A 132 nt-1.27□□□□□ -2.61
CDC39P25655 YKL118WYKL118W 312 nt-1.27□□□□□ -2.61
CDC39P25655 YNL205CYNL205C 423 nt-1.28□□□□□ -2.61
CDC39P25655 snR50snR50 90 nt-1.31□□□□□ -2.62
CDC39P25655 tM(CAU)Q2tM(CAU)Q2 78 nt-1.32□□□□□ -2.62
CDC39P25655 tD(GUC)QtD(GUC)Q 75 nt-1.34□□□□□ -2.62
CDC39P25655 snR81snR81 201 nt-1.35□□□□□ -2.63
CDC39P25655 snR39BsnR39B 96 nt-1.35□□□□□ -2.63
CDC39P25655 YGL041CYGL041C 204 nt-1.36□□□□□ -2.63
CDC39P25655 tY(GUA)QtY(GUA)Q 84 nt-1.36□□□□□ -2.63
CDC39P25655 SKI7YOR076C 2244 nt-1.38□□□□□ -2.63
CDC39P25655 Q0017Q0017 162 nt-1.38□□□□□ -2.63
CDC39P25655 snR67snR67 82 nt-1.39□□□□□ -2.63
CDC39P25655 snR77snR77 88 nt-1.4□□□□□ -2.63
CDC39P25655 YOR381W-AYOR381W-A 168 nt-1.44□□□□□ -2.64
CDC39P25655 YLR299C-AYLR299C-A 93 nt-1.45□□□□□ -2.64
CDC39P25655 YDL240C-AYDL240C-A 138 nt-1.46□□□□□ -2.64
CDC39P25655 CDC65tQ(CUG)M 72 nt-1.46□□□□□ -2.64
CDC39P25655 YGR240C-AYGR240C-A 201 nt-1.48□□□□□ -2.65
CDC39P25655 YBR131C-AYBR131C-A 90 nt-1.49□□□□□ -2.65
CDC39P25655 YBR178WYBR178W 375 nt-1.49□□□□□ -2.65
CDC39P25655 YML054C-AYML054C-A 159 nt-1.5□□□□□ -2.65
CDC39P25655 YBR196C-AYBR196C-A 150 nt-1.51□□□□□ -2.65
CDC39P25655 RPL39YJL189W 156 nt-1.52□□□□□ -2.65
CDC39P25655 GIM4YEL003W 336 nt-1.52□□□□□ -2.65
CDC39P25655 snR55snR55 98 nt-1.54□□□□□ -2.66
CDC39P25655 tF(GAA)QtF(GAA)Q 75 nt-1.55□□□□□ -2.66
CDC39P25655 YLR222C-AYLR222C-A 231 nt-1.56□□□□□ -2.66
CDC39P25655 YPR012WYPR012W 255 nt-1.59□□□□□ -2.66
CDC39P25655 YLR286W-AYLR286W-A 135 nt-1.61□□□□□ -2.67
CDC39P25655 YNL097C-BYNL097C-B 123 nt-1.62□□□□□ -2.67
CDC39P25655 YDR118W-AYDR118W-A 117 nt-1.65□□□□□ -2.67
CDC39P25655 YDL159C-BYDL159C-B 177 nt-1.66□□□□□ -2.67
CDC39P25655 VAR1Q0140 1197 nt-1.66□□□□□ -2.67
CDC39P25655 YNL198CYNL198C 303 nt-1.66□□□□□ -2.67
CDC39P25655 YHR180C-BYHR180C-B 105 nt-1.66□□□□□ -2.68
CDC39P25655 YHL015W-AYHL015W-A 84 nt-1.67□□□□□ -2.68
CDC39P25655 tL(UAA)QtL(UAA)Q 85 nt-1.67□□□□□ -2.68
CDC39P25655 YLR342W-AYLR342W-A 174 nt-1.67□□□□□ -2.68
CDC39P25655 snR48snR48 113 nt-1.67□□□□□ -2.68
CDC39P25655 YNL277W-AYNL277W-A 189 nt-1.69□□□□□ -2.68
CDC39P25655 YOR302WYOR302W 78 nt-1.69□□□□□ -2.68
CDC39P25655 YOR376W-AYOR376W-A 156 nt-1.7□□□□□ -2.68
CDC39P25655 YJL150WYJL150W 303 nt-1.72□□□□□ -2.68
CDC39P25655 YGL188C-AYGL188C-A 141 nt-1.74□□□□□ -2.69
CDC39P25655 YOR102WYOR102W 351 nt-1.75□□□□□ -2.69
CDC39P25655 snR65snR65 100 nt-1.76□□□□□ -2.69
CDC39P25655 YMR315W-AYMR315W-A 108 nt-1.79□□□□□ -2.7
CDC39P25655 YPL152W-AYPL152W-A 99 nt-1.79□□□□□ -2.7
CDC39P25655 YOR316C-AYOR316C-A 210 nt-1.81□□□□□ -2.7
CDC39P25655 RPL41AYDL184C 78 nt-1.85□□□□□ -2.71
CDC39P25655 snR52snR52 92 nt-1.89□□□□□ -2.71
CDC39P25655 YBR126W-BYBR126W-B 144 nt-1.93□□□□□ -2.72
CDC39P25655 YOL166W-AYOL166W-A 156 nt-1.94□□□□□ -2.72
CDC39P25655 YOL155W-AYOL155W-A 135 nt-1.97□□□□□ -2.72
CDC39P25655 YOR309CYOR309C 381 nt-1.99□□□□□ -2.73
CDC39P25655 YDR406W-AYDR406W-A 246 nt-1.99□□□□□ -2.73
CDC39P25655 YBR296C-AYBR296C-A 120 nt-2.01□□□□□ -2.73
CDC39P25655 YKL106C-AYKL106C-A 120 nt-2.03□□□□□ -2.73
CDC39P25655 YCR095W-AYCR095W-A 159 nt-2.04□□□□□ -2.74
CDC39P25655 SOM1YEL059C-A 225 nt-2.04□□□□□ -2.74
CDC39P25655 YDR543CYDR543C 300 nt-2.11□□□□□ -2.75
CDC39P25655 snR56snR56 88 nt-2.14□□□□□ -2.75
CDC39P25655 YDR524W-CYDR524W-C 90 nt-2.14□□□□□ -2.75
CDC39P25655 snR80snR80 171 nt-2.15□□□□□ -2.75
CDC39P25655 snR38snR38 95 nt-2.15□□□□□ -2.75
CDC39P25655 YHR175W-AYHR175W-A 150 nt-2.18□□□□□ -2.76
CDC39P25655 YGR151CYGR151C 336 nt-2.24□□□□□ -2.77
CDC39P25655 YBL053WYBL053W 375 nt-2.24□□□□□ -2.77
CDC39P25655 YBR109W-AYBR109W-A 225 nt-2.25□□□□□ -2.77
CDC39P25655 Q0142Q0142 177 nt-2.26□□□□□ -2.77
CDC39P25655 Q0144Q0144 330 nt-2.26□□□□□ -2.77
CDC39P25655 YBL071C-BYBL071C-B 99 nt-2.26□□□□□ -2.77
CDC39P25655 YOL083C-AYOL083C-A 141 nt-2.27□□□□□ -2.77
CDC39P25655 YOR231C-AYOR231C-A 201 nt-2.33□□□□□ -2.78
CDC39P25655 YOR335W-AYOR335W-A 81 nt-2.35□□□□□ -2.78
CDC39P25655 snR6snR6 112 nt-2.41□□□□□ -2.8
CDC39P25655 RPL41BYDL133C-A 78 nt-2.43□□□□□ -2.8
CDC39P25655 snR47snR47 99 nt-2.44□□□□□ -2.8
CDC39P25655 SPG3YDR504C 384 nt-2.45□□□□□ -2.8
CDC39P25655 YOL164W-AYOL164W-A 183 nt-2.46□□□□□ -2.8
CDC39P25655 snR73snR73 106 nt-2.47□□□□□ -2.8
CDC39P25655 YAL037C-AYAL037C-A 93 nt-2.47□□□□□ -2.8
CDC39P25655 YMR046W-AYMR046W-A 129 nt-2.5□□□□□ -2.81
CDC39P25655 tR(ACG)Q2tR(ACG)Q2 74 nt-2.52□□□□□ -2.81
CDC39P25655 YBL100W-CYBL100W-C 120 nt-2.54□□□□□ -2.82
CDC39P25655 YNL337WYNL337W 255 nt-2.56□□□□□ -2.82
CDC39P25655 tV(UAC)QtV(UAC)Q 76 nt-2.59□□□□□ -2.82
CDC39P25655 YDL114W-AYDL114W-A 114 nt-2.61□□□□□ -2.83
CDC39P25655 YDR524C-AYDR524C-A 120 nt-2.66□□□□□ -2.83
CDC39P25655 tS(GCU)Q1tS(GCU)Q1 86 nt-2.69□□□□□ -2.84
CDC39P25655 YCL001W-BYCL001W-B 255 nt-2.7□□□□□ -2.84
CDC39P25655 snR85snR85 171 nt-2.71□□□□□ -2.84
CDC39P25655 YKL225WYKL225W 348 nt-2.72□□□□□ -2.85
CDC39P25655 tM(CAU)Q1tM(CAU)Q1 76 nt-2.79□□□□□ -2.86
CDC39P25655 YGR122C-AYGR122C-A 129 nt-2.81□□□□□ -2.86
CDC39P25655 YLR466C-BYLR466C-B 117 nt-2.84□□□□□ -2.86
CDC39P25655 YJR162CYJR162C 351 nt-2.92□□□□□ -2.88
CDC39P25655 YNL103W-AYNL103W-A 90 nt-3.02□□□□□ -2.89
Retrieved 100 of 7,029 protein–RNA pairs in 56.9 ms