Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAV1-2A0A0B4J238 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRAV1-2A0A0B4J238 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRAV1-2A0A0B4J238 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
TRAV1-2A0A0B4J238 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.63■■□□□ 1.21
TRAV1-2A0A0B4J238 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.62■■□□□ 1.21
TRAV1-2A0A0B4J238 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAV1-2A0A0B4J238 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAV1-2A0A0B4J238 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRAV1-2A0A0B4J238 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAV1-2A0A0B4J238 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRAV1-2A0A0B4J238 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.59■■□□□ 1.21
TRAV1-2A0A0B4J238 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAV1-2A0A0B4J238 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAV1-2A0A0B4J238 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TRAV1-2A0A0B4J238 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAV1-2A0A0B4J238 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.58■■□□□ 1.21
TRAV1-2A0A0B4J238 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.58■■□□□ 1.2
TRAV1-2A0A0B4J238 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV1-2A0A0B4J238 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV1-2A0A0B4J238 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV1-2A0A0B4J238 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC22.57■■□□□ 1.2
TRAV1-2A0A0B4J238 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.56■■□□□ 1.2
TRAV1-2A0A0B4J238 AP004833.2-201ENST00000532228 1454 ntBASIC22.56■■□□□ 1.2
TRAV1-2A0A0B4J238 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRAV1-2A0A0B4J238 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC22.56■■□□□ 1.2
TRAV1-2A0A0B4J238 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
TRAV1-2A0A0B4J238 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRAV1-2A0A0B4J238 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRAV1-2A0A0B4J238 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
TRAV1-2A0A0B4J238 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.54■■□□□ 1.2
TRAV1-2A0A0B4J238 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAV1-2A0A0B4J238 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.54■■□□□ 1.2
TRAV1-2A0A0B4J238 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
TRAV1-2A0A0B4J238 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAV1-2A0A0B4J238 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRAV1-2A0A0B4J238 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAV1-2A0A0B4J238 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
TRAV1-2A0A0B4J238 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TRAV1-2A0A0B4J238 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.19
TRAV1-2A0A0B4J238 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAV1-2A0A0B4J238 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAV1-2A0A0B4J238 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAV1-2A0A0B4J238 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
TRAV1-2A0A0B4J238 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 AC135731.1-201ENST00000569415 2548 ntBASIC22.49■■□□□ 1.19
TRAV1-2A0A0B4J238 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC22.48■■□□□ 1.19
TRAV1-2A0A0B4J238 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TRAV1-2A0A0B4J238 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.48■■□□□ 1.19
TRAV1-2A0A0B4J238 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRAV1-2A0A0B4J238 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.47■■□□□ 1.19
TRAV1-2A0A0B4J238 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
TRAV1-2A0A0B4J238 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.47■■□□□ 1.19
TRAV1-2A0A0B4J238 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV1-2A0A0B4J238 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
TRAV1-2A0A0B4J238 LINC01003-201ENST00000564834 1764 ntBASIC22.46■■□□□ 1.19
TRAV1-2A0A0B4J238 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV1-2A0A0B4J238 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
TRAV1-2A0A0B4J238 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRAV1-2A0A0B4J238 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV1-2A0A0B4J238 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
TRAV1-2A0A0B4J238 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC22.44■■□□□ 1.18
TRAV1-2A0A0B4J238 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.43■■□□□ 1.18
TRAV1-2A0A0B4J238 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV1-2A0A0B4J238 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV1-2A0A0B4J238 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
TRAV1-2A0A0B4J238 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV1-2A0A0B4J238 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
TRAV1-2A0A0B4J238 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRAV1-2A0A0B4J238 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
TRAV1-2A0A0B4J238 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC22.42■■□□□ 1.18
TRAV1-2A0A0B4J238 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRAV1-2A0A0B4J238 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
TRAV1-2A0A0B4J238 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TRAV1-2A0A0B4J238 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
TRAV1-2A0A0B4J238 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV1-2A0A0B4J238 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
TRAV1-2A0A0B4J238 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRAV1-2A0A0B4J238 AL133380.1-201ENST00000506013 324 ntBASIC22.39■■□□□ 1.17
TRAV1-2A0A0B4J238 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRAV1-2A0A0B4J238 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV1-2A0A0B4J238 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV1-2A0A0B4J238 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV1-2A0A0B4J238 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV1-2A0A0B4J238 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms