Protein–RNA interactions for Protein: Q04673

SSL1, General transcription and DNA repair factor IIH subunit SSL1, yeastyeast

Predicted RBP Predictions only

Length 461 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL1Q04673 TAH1YCR060W 336 nt1.61□□□□□ -2.15
SSL1Q04673 STB6YKL072W 2301 nt1.61□□□□□ -2.15
SSL1Q04673 SWI4YER111C 3282 nt1.6□□□□□ -2.15
SSL1Q04673 RPL26BYGR034W 384 nt1.6□□□□□ -2.15
SSL1Q04673 QCR9YGR183C 201 nt1.6□□□□□ -2.15
SSL1Q04673 MON2YNL297C 4911 nt1.6□□□□□ -2.15
SSL1Q04673 APL3YBL037W 3078 nt1.6□□□□□ -2.15
SSL1Q04673 IRA1YBR140C 9279 nt1.6□□□□□ -2.15
SSL1Q04673 YGR130CYGR130C 2451 nt1.59□□□□□ -2.16
SSL1Q04673 NUP145YGL092W 3954 nt1.58□□□□□ -2.16
SSL1Q04673 YLR041WYLR041W 321 nt1.58□□□□□ -2.16
SSL1Q04673 BST1YFL025C 3090 nt1.58□□□□□ -2.16
SSL1Q04673 SEC21YNL287W 2808 nt1.57□□□□□ -2.16
SSL1Q04673 FYV10YIL097W 1551 nt1.56□□□□□ -2.16
SSL1Q04673 snR61snR61 90 nt1.56□□□□□ -2.16
SSL1Q04673 tM(CAU)Q2tM(CAU)Q2 78 nt1.56□□□□□ -2.16
SSL1Q04673 YNL103W-AYNL103W-A 90 nt1.56□□□□□ -2.16
SSL1Q04673 snR190snR190 190 nt1.56□□□□□ -2.16
SSL1Q04673 YBR200W-AYBR200W-A 165 nt1.56□□□□□ -2.16
SSL1Q04673 YLR419WYLR419W 4308 nt1.55□□□□□ -2.16
SSL1Q04673 YLR232WYLR232W 348 nt1.55□□□□□ -2.16
SSL1Q04673 PIK1YNL267W 3201 nt1.55□□□□□ -2.16
SSL1Q04673 RPM2YML091C 3609 nt1.54□□□□□ -2.16
SSL1Q04673 YHR217CYHR217C 462 nt1.53□□□□□ -2.16
SSL1Q04673 LAA1YJL207C 6045 nt1.53□□□□□ -2.17
SSL1Q04673 SEC3YER008C 4011 nt1.52□□□□□ -2.17
SSL1Q04673 SPC110YDR356W 2835 nt1.52□□□□□ -2.17
SSL1Q04673 AZF1YOR113W 2745 nt1.52□□□□□ -2.17
SSL1Q04673 snR39BsnR39B 96 nt1.51□□□□□ -2.17
SSL1Q04673 CAT8YMR280C 4302 nt1.51□□□□□ -2.17
SSL1Q04673 GEA2YEL022W 4380 nt1.5□□□□□ -2.17
SSL1Q04673 YHR131W-AYHR131W-A 246 nt1.49□□□□□ -2.17
SSL1Q04673 SBH1YER087C-B 249 nt1.48□□□□□ -2.17
SSL1Q04673 EST2YLR318W 2655 nt1.48□□□□□ -2.17
SSL1Q04673 RAD9YDR217C 3930 nt1.47□□□□□ -2.17
SSL1Q04673 MSN5YDR335W 3675 nt1.47□□□□□ -2.17
SSL1Q04673 SEC8YPR055W 3198 nt1.47□□□□□ -2.17
SSL1Q04673 ASE1YOR058C 2658 nt1.46□□□□□ -2.18
SSL1Q04673 TRM732YMR259C 4263 nt1.46□□□□□ -2.18
SSL1Q04673 IML1YJR138W 4755 nt1.45□□□□□ -2.18
SSL1Q04673 NUP157YER105C 4176 nt1.44□□□□□ -2.18
SSL1Q04673 NUP188YML103C 4968 nt1.44□□□□□ -2.18
SSL1Q04673 YJL127W-AYJL127W-A 117 nt1.43□□□□□ -2.18
SSL1Q04673 YDL247W-AYDL247W-A 75 nt1.42□□□□□ -2.18
SSL1Q04673 YLR399W-AYLR399W-A 105 nt1.42□□□□□ -2.18
SSL1Q04673 PRP16YKR086W 3216 nt1.42□□□□□ -2.18
SSL1Q04673 BEM3YPL115C 3387 nt1.41□□□□□ -2.18
SSL1Q04673 UTP20YBL004W 7482 nt1.4□□□□□ -2.18
SSL1Q04673 YGR146C-AYGR146C-A 162 nt1.4□□□□□ -2.19
SSL1Q04673 KAP120YPL125W 3099 nt1.4□□□□□ -2.19
SSL1Q04673 COG6YNL041C 2520 nt1.39□□□□□ -2.19
SSL1Q04673 PET127YOR017W 2403 nt1.39□□□□□ -2.19
SSL1Q04673 HKR1YDR420W 5409 nt1.39□□□□□ -2.19
SSL1Q04673 YDR210WYDR210W 228 nt1.39□□□□□ -2.19
SSL1Q04673 YGL041C-BYGL041C-B 183 nt1.39□□□□□ -2.19
SSL1Q04673 tF(GAA)BtF(GAA)B 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)FtF(GAA)F 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)GtF(GAA)G 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)H1tF(GAA)H1 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)H2tF(GAA)H2 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)MtF(GAA)M 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)P1tF(GAA)P1 73 nt1.38□□□□□ -2.19
SSL1Q04673 tF(GAA)P2tF(GAA)P2 73 nt1.38□□□□□ -2.19
SSL1Q04673 YPR160W-AYPR160W-A 81 nt1.37□□□□□ -2.19
SSL1Q04673 UBP3YER151C 2739 nt1.37□□□□□ -2.19
SSL1Q04673 DOP1YDR141C 5097 nt1.36□□□□□ -2.19
SSL1Q04673 YSP1YHR155W 3687 nt1.36□□□□□ -2.19
SSL1Q04673 tQ(UUG)E2tQ(UUG)E2 72 nt1.35□□□□□ -2.19
SSL1Q04673 YNL284C-BYNL284C-B 5268 nt1.34□□□□□ -2.19
SSL1Q04673 BIR1YJR089W 2865 nt1.34□□□□□ -2.2
SSL1Q04673 YDL073WYDL073W 2955 nt1.34□□□□□ -2.2
SSL1Q04673 SEC1YDR164C 2175 nt1.32□□□□□ -2.2
SSL1Q04673 CDC39YCR093W 6327 nt1.32□□□□□ -2.2
SSL1Q04673 YNL266WYNL266W 420 nt1.31□□□□□ -2.2
SSL1Q04673 tH(GUG)E1tH(GUG)E1 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)E2tH(GUG)E2 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)G1tH(GUG)G1 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)G2tH(GUG)G2 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)HtH(GUG)H 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)KtH(GUG)K 72 nt1.3□□□□□ -2.2
SSL1Q04673 tH(GUG)MtH(GUG)M 72 nt1.3□□□□□ -2.2
SSL1Q04673 tN(GUU)QtN(GUU)Q 71 nt1.3□□□□□ -2.2
SSL1Q04673 RCO1YMR075W 2055 nt1.3□□□□□ -2.2
SSL1Q04673 GLG1YKR058W 1851 nt1.26□□□□□ -2.21
SSL1Q04673 ULP2YIL031W 3105 nt1.26□□□□□ -2.21
SSL1Q04673 YBR072C-AYBR072C-A 162 nt1.25□□□□□ -2.21
SSL1Q04673 NST1YNL091W 3723 nt1.24□□□□□ -2.21
SSL1Q04673 YAL037C-AYAL037C-A 93 nt1.22□□□□□ -2.21
SSL1Q04673 tV(UAC)BtV(UAC)B 74 nt1.21□□□□□ -2.22
SSL1Q04673 tV(UAC)DtV(UAC)D 74 nt1.21□□□□□ -2.22
SSL1Q04673 YOL014WYOL014W 375 nt1.2□□□□□ -2.22
SSL1Q04673 snR81snR81 201 nt1.19□□□□□ -2.22
SSL1Q04673 YBR196C-AYBR196C-A 150 nt1.17□□□□□ -2.22
SSL1Q04673 tS(GCU)Q1tS(GCU)Q1 86 nt1.16□□□□□ -2.22
SSL1Q04673 NNF2YGR089W 2811 nt1.16□□□□□ -2.22
SSL1Q04673 SPT7YBR081C 3999 nt1.15□□□□□ -2.22
SSL1Q04673 SEC10YLR166C 2616 nt1.14□□□□□ -2.23
SSL1Q04673 SIP4YJL089W 2490 nt1.12□□□□□ -2.23
SSL1Q04673 YIL142C-AYIL142C-A 333 nt1.11□□□□□ -2.23
SSL1Q04673 YLL006W-AYLL006W-A 177 nt1.1□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 61.7 ms