Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 SEC3YER008C 4011 nt1.14□□□□□ -2.23
RPN11P43588 COX12YLR038C 252 nt1.13□□□□□ -2.23
RPN11P43588 YGL123C-AYGL123C-A 231 nt1.11□□□□□ -2.23
RPN11P43588 YER053C-AYER053C-A 114 nt1.1□□□□□ -2.23
RPN11P43588 BFR2YDR299W 1605 nt1.1□□□□□ -2.23
RPN11P43588 YJL150WYJL150W 303 nt1.09□□□□□ -2.23
RPN11P43588 RKR1YMR247C 4689 nt1.09□□□□□ -2.24
RPN11P43588 RAD9YDR217C 3930 nt1.08□□□□□ -2.24
RPN11P43588 PMP1YCR024C-A 123 nt1.08□□□□□ -2.24
RPN11P43588 RPL26BYGR034W 384 nt1.08□□□□□ -2.24
RPN11P43588 YLR282CYLR282C 342 nt1.08□□□□□ -2.24
RPN11P43588 YPR117WYPR117W 7470 nt1.07□□□□□ -2.24
RPN11P43588 YJL182CYJL182C 318 nt1.07□□□□□ -2.24
RPN11P43588 YNL337WYNL337W 255 nt1.07□□□□□ -2.24
RPN11P43588 snR190snR190 190 nt1.07□□□□□ -2.24
RPN11P43588 ASE1YOR058C 2658 nt1.07□□□□□ -2.24
RPN11P43588 TRS65YGR166W 1683 nt1.05□□□□□ -2.24
RPN11P43588 YIL002W-AYIL002W-A 210 nt1.04□□□□□ -2.24
RPN11P43588 snR46snR46 197 nt1.03□□□□□ -2.24
RPN11P43588 YLR466C-BYLR466C-B 117 nt1.02□□□□□ -2.25
RPN11P43588 FYV10YIL097W 1551 nt1.01□□□□□ -2.25
RPN11P43588 YGR151CYGR151C 336 nt1.01□□□□□ -2.25
RPN11P43588 YML002WYML002W 2214 nt1.01□□□□□ -2.25
RPN11P43588 COX5BYIL111W 456 nt1□□□□□ -2.25
RPN11P43588 YLR342W-AYLR342W-A 174 nt1□□□□□ -2.25
RPN11P43588 PRP16YKR086W 3216 nt1□□□□□ -2.25
RPN11P43588 PRP42YDR235W 1635 nt0.97□□□□□ -2.25
RPN11P43588 PRP5YBR237W 2550 nt0.97□□□□□ -2.25
RPN11P43588 KAP120YPL125W 3099 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)BtT(AGU)B 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)CtT(AGU)C 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)DtT(AGU)D 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)HtT(AGU)H 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)I1tT(AGU)I1 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)I2tT(AGU)I2 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)JtT(AGU)J 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)N1tT(AGU)N1 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)N2tT(AGU)N2 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)O1tT(AGU)O1 73 nt0.97□□□□□ -2.25
RPN11P43588 tT(AGU)O2tT(AGU)O2 73 nt0.97□□□□□ -2.25
RPN11P43588 HAL9YOL089C 3093 nt0.97□□□□□ -2.25
RPN11P43588 VAM6YDL077C 3150 nt0.96□□□□□ -2.26
RPN11P43588 tN(GUU)QtN(GUU)Q 71 nt0.96□□□□□ -2.26
RPN11P43588 YKL100W-AYKL100W-A 90 nt0.96□□□□□ -2.26
RPN11P43588 YNL338WYNL338W 159 nt0.96□□□□□ -2.26
RPN11P43588 PRP39YML046W 1890 nt0.96□□□□□ -2.26
RPN11P43588 YEL073CYEL073C 324 nt0.95□□□□□ -2.26
RPN11P43588 EMT1tM(CAU)D 73 nt0.95□□□□□ -2.26
RPN11P43588 EMT5tM(CAU)J1 73 nt0.95□□□□□ -2.26
RPN11P43588 EMT3tM(CAU)J2 73 nt0.95□□□□□ -2.26
RPN11P43588 EMT4tM(CAU)M 73 nt0.95□□□□□ -2.26
RPN11P43588 EMT2tM(CAU)O2 73 nt0.95□□□□□ -2.26
RPN11P43588 BUL2YML111W 2763 nt0.94□□□□□ -2.26
RPN11P43588 YPR160W-AYPR160W-A 81 nt0.93□□□□□ -2.26
RPN11P43588 SEC8YPR055W 3198 nt0.93□□□□□ -2.26
RPN11P43588 SCC2YDR180W 4482 nt0.92□□□□□ -2.26
RPN11P43588 YDR544CYDR544C 429 nt0.91□□□□□ -2.26
RPN11P43588 ULP2YIL031W 3105 nt0.9□□□□□ -2.27
RPN11P43588 CHS6YJL099W 2241 nt0.89□□□□□ -2.27
RPN11P43588 YGL182CYGL182C 324 nt0.88□□□□□ -2.27
RPN11P43588 YLR399W-AYLR399W-A 105 nt0.88□□□□□ -2.27
RPN11P43588 YBL053WYBL053W 375 nt0.88□□□□□ -2.27
RPN11P43588 YOR225WYOR225W 330 nt0.88□□□□□ -2.27
RPN11P43588 AI1Q0050 2505 nt0.87□□□□□ -2.27
RPN11P43588 YGL007C-AYGL007C-A 87 nt0.87□□□□□ -2.27
RPN11P43588 YLR041WYLR041W 321 nt0.87□□□□□ -2.27
RPN11P43588 FMP27YLR454W 7887 nt0.86□□□□□ -2.27
RPN11P43588 YBL039C-AYBL039C-A 84 nt0.86□□□□□ -2.27
RPN11P43588 SEC1YDR164C 2175 nt0.86□□□□□ -2.27
RPN11P43588 BEM3YPL115C 3387 nt0.85□□□□□ -2.27
RPN11P43588 SNU13YEL026W 381 nt0.85□□□□□ -2.27
RPN11P43588 YHR131W-AYHR131W-A 246 nt0.85□□□□□ -2.27
RPN11P43588 YLR232WYLR232W 348 nt0.85□□□□□ -2.27
RPN11P43588 YOR381W-AYOR381W-A 168 nt0.85□□□□□ -2.27
RPN11P43588 YOR192C-BYOR192C-B 5313 nt0.85□□□□□ -2.27
RPN11P43588 Q0032Q0032 291 nt0.82□□□□□ -2.28
RPN11P43588 OST4YDL232W 111 nt0.82□□□□□ -2.28
RPN11P43588 YHL015W-AYHL015W-A 84 nt0.82□□□□□ -2.28
RPN11P43588 YLR294CYLR294C 330 nt0.79□□□□□ -2.28
RPN11P43588 YJL127W-AYJL127W-A 117 nt0.78□□□□□ -2.28
RPN11P43588 YOR102WYOR102W 351 nt0.76□□□□□ -2.29
RPN11P43588 YOR329W-AYOR329W-A 210 nt0.75□□□□□ -2.29
RPN11P43588 IQG1YPL242C 4488 nt0.74□□□□□ -2.29
RPN11P43588 YER078W-AYER078W-A 165 nt0.74□□□□□ -2.29
RPN11P43588 YOR170WYOR170W 306 nt0.74□□□□□ -2.29
RPN11P43588 YBR072C-AYBR072C-A 162 nt0.74□□□□□ -2.29
RPN11P43588 UTP10YJL109C 5310 nt0.74□□□□□ -2.29
RPN11P43588 LTE1YAL024C 4308 nt0.73□□□□□ -2.29
RPN11P43588 tL(UAA)QtL(UAA)Q 85 nt0.73□□□□□ -2.29
RPN11P43588 NNF2YGR089W 2811 nt0.71□□□□□ -2.3
RPN11P43588 COG6YNL041C 2520 nt0.71□□□□□ -2.3
RPN11P43588 SDH6YDR379C-A 240 nt0.71□□□□□ -2.3
RPN11P43588 YLL006W-AYLL006W-A 177 nt0.71□□□□□ -2.3
RPN11P43588 YSP1YHR155W 3687 nt0.71□□□□□ -2.3
RPN11P43588 tM(CAU)Q2tM(CAU)Q2 78 nt0.69□□□□□ -2.3
RPN11P43588 PET111YMR257C 2403 nt0.69□□□□□ -2.3
RPN11P43588 YDR210WYDR210W 228 nt0.68□□□□□ -2.3
RPN11P43588 snR39BsnR39B 96 nt0.68□□□□□ -2.3
RPN11P43588 snR48snR48 113 nt0.68□□□□□ -2.3
RPN11P43588 CSE1YGL238W 2883 nt0.65□□□□□ -2.31
Retrieved 100 of 7,029 protein–RNA pairs in 31.6 ms