Protein–RNA interactions for Protein: P04819

CDC9, DNA ligase 1, yeastyeast

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC9P04819 CAT8YMR280C 4302 nt1.34□□□□□ -2.2
CDC9P04819 PET127YOR017W 2403 nt1.33□□□□□ -2.2
CDC9P04819 YLR399W-AYLR399W-A 105 nt1.33□□□□□ -2.2
CDC9P04819 HKR1YDR420W 5409 nt1.32□□□□□ -2.2
CDC9P04819 YNL170WYNL170W 396 nt1.32□□□□□ -2.2
CDC9P04819 PRP16YKR086W 3216 nt1.32□□□□□ -2.2
CDC9P04819 YBL039C-AYBL039C-A 84 nt1.31□□□□□ -2.2
CDC9P04819 YOR314W-AYOR314W-A 111 nt1.31□□□□□ -2.2
CDC9P04819 RAD9YDR217C 3930 nt1.3□□□□□ -2.2
CDC9P04819 TAH1YCR060W 336 nt1.3□□□□□ -2.2
CDC9P04819 YIL020C-AYIL020C-A 339 nt1.3□□□□□ -2.2
CDC9P04819 YLR232WYLR232W 348 nt1.3□□□□□ -2.2
CDC9P04819 FYV8YGR196C 2454 nt1.29□□□□□ -2.2
CDC9P04819 SDH6YDR379C-A 240 nt1.29□□□□□ -2.2
CDC9P04819 YBL053WYBL053W 375 nt1.28□□□□□ -2.2
CDC9P04819 YPR160W-AYPR160W-A 81 nt1.28□□□□□ -2.2
CDC9P04819 CHS6YJL099W 2241 nt1.28□□□□□ -2.2
CDC9P04819 tH(GUG)E1tH(GUG)E1 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)E2tH(GUG)E2 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)G1tH(GUG)G1 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)G2tH(GUG)G2 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)HtH(GUG)H 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)KtH(GUG)K 72 nt1.27□□□□□ -2.21
CDC9P04819 tH(GUG)MtH(GUG)M 72 nt1.27□□□□□ -2.21
CDC9P04819 RPM2YML091C 3609 nt1.27□□□□□ -2.21
CDC9P04819 YNL284C-BYNL284C-B 5268 nt1.26□□□□□ -2.21
CDC9P04819 YHR131W-AYHR131W-A 246 nt1.25□□□□□ -2.21
CDC9P04819 MSH3YCR092C 3057 nt1.24□□□□□ -2.21
CDC9P04819 PAU12YGR294W 363 nt1.22□□□□□ -2.21
CDC9P04819 PAU24YBR301W 363 nt1.22□□□□□ -2.21
CDC9P04819 BEM3YPL115C 3387 nt1.22□□□□□ -2.21
CDC9P04819 tL(UAA)QtL(UAA)Q 85 nt1.21□□□□□ -2.22
CDC9P04819 YSP1YHR155W 3687 nt1.21□□□□□ -2.22
CDC9P04819 UBP3YER151C 2739 nt1.2□□□□□ -2.22
CDC9P04819 SPT7YBR081C 3999 nt1.19□□□□□ -2.22
CDC9P04819 tN(GUU)QtN(GUU)Q 71 nt1.17□□□□□ -2.22
CDC9P04819 tV(UAC)BtV(UAC)B 74 nt1.17□□□□□ -2.22
CDC9P04819 tV(UAC)DtV(UAC)D 74 nt1.17□□□□□ -2.22
CDC9P04819 NST1YNL091W 3723 nt1.16□□□□□ -2.22
CDC9P04819 tM(CAU)Q2tM(CAU)Q2 78 nt1.16□□□□□ -2.22
CDC9P04819 YOR329W-AYOR329W-A 210 nt1.16□□□□□ -2.22
CDC9P04819 SCC2YDR180W 4482 nt1.15□□□□□ -2.23
CDC9P04819 YDL073WYDL073W 2955 nt1.14□□□□□ -2.23
CDC9P04819 QCR9YGR183C 201 nt1.13□□□□□ -2.23
CDC9P04819 IML1YJR138W 4755 nt1.13□□□□□ -2.23
CDC9P04819 LAA1YJL207C 6045 nt1.13□□□□□ -2.23
CDC9P04819 YDR544CYDR544C 429 nt1.12□□□□□ -2.23
CDC9P04819 YNL067W-BYNL067W-B 141 nt1.11□□□□□ -2.23
CDC9P04819 YJR029WYJR029W 5268 nt1.11□□□□□ -2.23
CDC9P04819 YPR137C-BYPR137C-B 5268 nt1.11□□□□□ -2.23
CDC9P04819 OST4YDL232W 111 nt1.1□□□□□ -2.23
CDC9P04819 COG6YNL041C 2520 nt1.1□□□□□ -2.23
CDC9P04819 SIP4YJL089W 2490 nt1.08□□□□□ -2.24
CDC9P04819 LTE1YAL024C 4308 nt1.08□□□□□ -2.24
CDC9P04819 snR39BsnR39B 96 nt1.07□□□□□ -2.24
CDC9P04819 ULP2YIL031W 3105 nt1.06□□□□□ -2.24
CDC9P04819 YPR117WYPR117W 7470 nt1.06□□□□□ -2.24
CDC9P04819 YCR095W-AYCR095W-A 159 nt1.05□□□□□ -2.24
CDC9P04819 GLG1YKR058W 1851 nt1.05□□□□□ -2.24
CDC9P04819 YBR072C-AYBR072C-A 162 nt1.04□□□□□ -2.24
CDC9P04819 YCL001W-BYCL001W-B 255 nt1.04□□□□□ -2.24
CDC9P04819 tF(GAA)BtF(GAA)B 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)FtF(GAA)F 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)GtF(GAA)G 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)H1tF(GAA)H1 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)H2tF(GAA)H2 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)MtF(GAA)M 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)P1tF(GAA)P1 73 nt1.03□□□□□ -2.24
CDC9P04819 tF(GAA)P2tF(GAA)P2 73 nt1.03□□□□□ -2.24
CDC9P04819 YJL127W-AYJL127W-A 117 nt1.02□□□□□ -2.25
CDC9P04819 YDR210WYDR210W 228 nt1.01□□□□□ -2.25
CDC9P04819 SOM1YEL059C-A 225 nt1.01□□□□□ -2.25
CDC9P04819 YGR146C-AYGR146C-A 162 nt1.01□□□□□ -2.25
CDC9P04819 BUD3YCL014W 4911 nt1.01□□□□□ -2.25
CDC9P04819 VAM6YDL077C 3150 nt0.99□□□□□ -2.25
CDC9P04819 RKR1YMR247C 4689 nt0.98□□□□□ -2.25
CDC9P04819 NNF2YGR089W 2811 nt0.97□□□□□ -2.25
CDC9P04819 SEC1YDR164C 2175 nt0.97□□□□□ -2.25
CDC9P04819 YLL006W-AYLL006W-A 177 nt0.97□□□□□ -2.25
CDC9P04819 BEM2YER155C 6504 nt0.97□□□□□ -2.25
CDC9P04819 EMT1tM(CAU)D 73 nt0.95□□□□□ -2.26
CDC9P04819 EMT5tM(CAU)J1 73 nt0.95□□□□□ -2.26
CDC9P04819 EMT3tM(CAU)J2 73 nt0.95□□□□□ -2.26
CDC9P04819 EMT4tM(CAU)M 73 nt0.95□□□□□ -2.26
CDC9P04819 EMT2tM(CAU)O2 73 nt0.95□□□□□ -2.26
CDC9P04819 YBR099CYBR099C 384 nt0.93□□□□□ -2.26
CDC9P04819 YNL205CYNL205C 423 nt0.91□□□□□ -2.26
CDC9P04819 YOL014WYOL014W 375 nt0.89□□□□□ -2.27
CDC9P04819 Q0143Q0143 153 nt0.88□□□□□ -2.27
CDC9P04819 YIL071W-AYIL071W-A 477 nt0.88□□□□□ -2.27
CDC9P04819 PET111YMR257C 2403 nt0.88□□□□□ -2.27
CDC9P04819 DOP1YDR141C 5097 nt0.86□□□□□ -2.27
CDC9P04819 MLP1YKR095W 5628 nt0.86□□□□□ -2.27
CDC9P04819 NIP1YMR309C 2439 nt0.86□□□□□ -2.27
CDC9P04819 CSE1YGL238W 2883 nt0.86□□□□□ -2.27
CDC9P04819 BIR1YJR089W 2865 nt0.83□□□□□ -2.28
CDC9P04819 BUL2YML111W 2763 nt0.81□□□□□ -2.28
CDC9P04819 YIL142C-AYIL142C-A 333 nt0.81□□□□□ -2.28
CDC9P04819 YOR192C-BYOR192C-B 5313 nt0.81□□□□□ -2.28
CDC9P04819 YKL145W-AYKL145W-A 93 nt0.8□□□□□ -2.28
Retrieved 100 of 7,029 protein–RNA pairs in 7.3 ms