Protein–RNA interactions for Protein: P89113

DDR2, Protein DDR2, yeast

Predictions only

Length 61 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
DDR2	P89113	COX7	YMR256C	183 nt		-2.4	□□□□□ -2.79
DDR2	P89113	BER1	YLR412W	825 nt		-2.41	□□□□□ -2.8
DDR2	P89113	YDR290W	YDR290W	330 nt		-2.42	□□□□□ -2.8
DDR2	P89113	YGR228W	YGR228W	345 nt		-2.43	□□□□□ -2.8
DDR2	P89113	SPO12	YHR152W	522 nt		-2.43	□□□□□ -2.8
DDR2	P89113	YPL261C	YPL261C	309 nt		-2.43	□□□□□ -2.8
DDR2	P89113	CMS1	YLR003C	876 nt		-2.44	□□□□□ -2.8
DDR2	P89113	YOR366W	YOR366W	354 nt		-2.44	□□□□□ -2.8
DDR2	P89113	RUF20	RUF20	443 nt		-2.45	□□□□□ -2.8
DDR2	P89113	RSM18	YER050C	417 nt		-2.47	□□□□□ -2.8
DDR2	P89113	snR189	snR189	189 nt		-2.48	□□□□□ -2.81
DDR2	P89113	YER135C	YER135C	393 nt		-2.49	□□□□□ -2.81
DDR2	P89113	SCEI	Q0160	708 nt		-2.49	□□□□□ -2.81
DDR2	P89113	YPR016W-A	YPR016W-A	261 nt		-2.5	□□□□□ -2.81
DDR2	P89113	tT(UGU)Q1	tT(UGU)Q1	76 nt		-2.51	□□□□□ -2.81
DDR2	P89113	snR5	snR5	204 nt		-2.52	□□□□□ -2.81
DDR2	P89113	CUP1-1	YHR053C	186 nt		-2.52	□□□□□ -2.81
DDR2	P89113	CUP1-2	YHR055C	186 nt		-2.52	□□□□□ -2.81
DDR2	P89113	POL32	YJR043C	1053 nt		-2.54	□□□□□ -2.82
DDR2	P89113	snR72	snR72	98 nt		-2.55	□□□□□ -2.82
DDR2	P89113	YOR192C-C	YOR192C-C	237 nt		-2.55	□□□□□ -2.82
DDR2	P89113	snR74	snR74	88 nt		-2.56	□□□□□ -2.82
DDR2	P89113	RPL22B	YFL034C-A	369 nt		-2.56	□□□□□ -2.82
DDR2	P89113	SGF11	YPL047W	300 nt		-2.56	□□□□□ -2.82
DDR2	P89113	PET20	YPL159C	762 nt		-2.56	□□□□□ -2.82
DDR2	P89113	SRB7	YDR308C	423 nt		-2.57	□□□□□ -2.82
DDR2	P89113	YJL077W-A	YJL077W-A	87 nt		-2.59	□□□□□ -2.82
DDR2	P89113	CBS1	YDL069C	690 nt		-2.6	□□□□□ -2.83
DDR2	P89113	DFG10	YIL049W	762 nt		-2.6	□□□□□ -2.83
DDR2	P89113	YJL086C	YJL086C	369 nt		-2.6	□□□□□ -2.83
DDR2	P89113	IRC16	YPR038W	360 nt		-2.61	□□□□□ -2.83
DDR2	P89113	YPR010C-A	YPR010C-A	219 nt		-2.62	□□□□□ -2.83
DDR2	P89113	snR24	snR24	89 nt		-2.62	□□□□□ -2.83
DDR2	P89113	MND1	YGL183C	660 nt		-2.63	□□□□□ -2.83
DDR2	P89113	YJR140W-A	YJR140W-A	150 nt		-2.63	□□□□□ -2.83
DDR2	P89113	YOR011W-A	YOR011W-A	207 nt		-2.64	□□□□□ -2.83
DDR2	P89113	YGL052W	YGL052W	306 nt		-2.65	□□□□□ -2.83
DDR2	P89113	HUR1	YGL168W	333 nt		-2.66	□□□□□ -2.84
DDR2	P89113	VPS20	YMR077C	666 nt		-2.66	□□□□□ -2.84
DDR2	P89113	RDS3	YPR094W	324 nt		-2.68	□□□□□ -2.84
DDR2	P89113	CWC23	YGL128C	852 nt		-2.69	□□□□□ -2.84
DDR2	P89113	CDC65	tQ(CUG)M	72 nt		-2.7	□□□□□ -2.84
DDR2	P89113	YGL015C	YGL015C	393 nt		-2.71	□□□□□ -2.84
DDR2	P89113	YBL107W-A	YBL107W-A	105 nt		-2.71	□□□□□ -2.84
DDR2	P89113	YER053C-A	YER053C-A	114 nt		-2.72	□□□□□ -2.84
DDR2	P89113	YNL058C	YNL058C	951 nt		-2.72	□□□□□ -2.84
DDR2	P89113	YNL162W-A	YNL162W-A	219 nt		-2.72	□□□□□ -2.84
DDR2	P89113	YDR366C	YDR366C	399 nt		-2.73	□□□□□ -2.85
DDR2	P89113	YHR125W	YHR125W	306 nt		-2.73	□□□□□ -2.85
DDR2	P89113	JLP2	YMR132C	627 nt		-2.75	□□□□□ -2.85
DDR2	P89113	snR81	snR81	201 nt		-2.77	□□□□□ -2.85
DDR2	P89113	THG1	YGR024C	714 nt		-2.77	□□□□□ -2.85
DDR2	P89113	SDH6	YDR379C-A	240 nt		-2.78	□□□□□ -2.85
DDR2	P89113	YGL239C	YGL239C	315 nt		-2.78	□□□□□ -2.85
DDR2	P89113	ACF4	YJR083C	930 nt		-2.79	□□□□□ -2.86
DDR2	P89113	YKL202W	YKL202W	582 nt		-2.8	□□□□□ -2.86
DDR2	P89113	YPT6	YLR262C	648 nt		-2.8	□□□□□ -2.86
DDR2	P89113	BNS1	YGR230W	414 nt		-2.82	□□□□□ -2.86
DDR2	P89113	YMR304C-A	YMR304C-A	351 nt		-2.82	□□□□□ -2.86
DDR2	P89113	VPS63	YLR261C	327 nt		-2.83	□□□□□ -2.86
DDR2	P89113	POP7	YBR167C	423 nt		-2.83	□□□□□ -2.86
DDR2	P89113	YDR543C	YDR543C	300 nt		-2.84	□□□□□ -2.86
DDR2	P89113	YAL068W-A	YAL068W-A	255 nt		-2.84	□□□□□ -2.86
DDR2	P89113	YPL229W	YPL229W	621 nt		-2.84	□□□□□ -2.86
DDR2	P89113	snR51	snR51	107 nt		-2.84	□□□□□ -2.86
DDR2	P89113	YOR293C-A	YOR293C-A	150 nt		-2.85	□□□□□ -2.87
DDR2	P89113	YOL106W	YOL106W	354 nt		-2.88	□□□□□ -2.87
DDR2	P89113	snR39B	snR39B	96 nt		-2.88	□□□□□ -2.87
DDR2	P89113	YER188C-A	YER188C-A	300 nt		-2.9	□□□□□ -2.87
DDR2	P89113	YGR240C-A	YGR240C-A	201 nt		-2.9	□□□□□ -2.87
DDR2	P89113	ZEO1	YOL109W	342 nt		-2.9	□□□□□ -2.87
DDR2	P89113	snR77	snR77	88 nt		-2.92	□□□□□ -2.88
DDR2	P89113	EAF6	YJR082C	342 nt		-2.92	□□□□□ -2.88
DDR2	P89113	AIM29	YKR074W	468 nt		-2.92	□□□□□ -2.88
DDR2	P89113	YBR285W	YBR285W	435 nt		-2.94	□□□□□ -2.88
DDR2	P89113	snR59	snR59	78 nt		-2.95	□□□□□ -2.88
DDR2	P89113	LSM4	YER112W	564 nt		-2.95	□□□□□ -2.88
DDR2	P89113	YKL044W	YKL044W	321 nt		-2.95	□□□□□ -2.88
DDR2	P89113	YGR025W	YGR025W	303 nt		-2.96	□□□□□ -2.88
DDR2	P89113	FYV7	YLR068W	456 nt		-2.96	□□□□□ -2.88
DDR2	P89113	YMR315W-A	YMR315W-A	108 nt		-2.96	□□□□□ -2.88
DDR2	P89113	YOR364W	YOR364W	369 nt		-2.98	□□□□□ -2.89
DDR2	P89113	HMLALPHA2	YCL067C	633 nt		-2.99	□□□□□ -2.89
DDR2	P89113	MATALPHA2	YCR039C	633 nt		-2.99	□□□□□ -2.89
DDR2	P89113	HMRA2	YCR096C	360 nt		-2.99	□□□□□ -2.89
DDR2	P89113	YNL205C	YNL205C	423 nt		-2.99	□□□□□ -2.89
DDR2	P89113	YOR121C	YOR121C	306 nt		-2.99	□□□□□ -2.89
DDR2	P89113	YJR087W	YJR087W	351 nt		-3	□□□□□ -2.89
DDR2	P89113	CSE2	YNR010W	450 nt		-3	□□□□□ -2.89
DDR2	P89113	YFR009W-A	YFR009W-A	258 nt		-3.01	□□□□□ -2.89
DDR2	P89113	YBL039C-A	YBL039C-A	84 nt		-3.04	□□□□□ -2.9
DDR2	P89113	YDR354C-A	YDR354C-A	144 nt		-3.05	□□□□□ -2.9
DDR2	P89113	YCR001W	YCR001W	315 nt		-3.07	□□□□□ -2.9
DDR2	P89113	YDR220C	YDR220C	294 nt		-3.07	□□□□□ -2.9
DDR2	P89113	RPS27B	YHR021C	249 nt		-3.08	□□□□□ -2.9
DDR2	P89113	ILM1	YJR118C	612 nt		-3.08	□□□□□ -2.9
DDR2	P89113	YGL230C	YGL230C	444 nt		-3.09	□□□□□ -2.9
DDR2	P89113	YKL083W	YKL083W	615 nt		-3.1	□□□□□ -2.91
DDR2	P89113	YKL100W-A	YKL100W-A	90 nt		-3.1	□□□□□ -2.91
DDR2	P89113	YMR193C-A	YMR193C-A	387 nt		-3.1	□□□□□ -2.91

Retrieved 100 of 7,029 protein–RNA pairs in 105.4 ms