Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 YFR036W-AYFR036W-A 651 nt9.81□□□□□ -0.84
SSL2Q00578 ELO1YJL196C 933 nt9.81□□□□□ -0.84
SSL2Q00578 SNZ1YMR096W 894 nt9.81□□□□□ -0.84
SSL2Q00578 YMR226CYMR226C 804 nt9.81□□□□□ -0.84
SSL2Q00578 RRT8YOL048C 1029 nt9.81□□□□□ -0.84
SSL2Q00578 AGP3YFL055W 1677 nt9.8□□□□□ -0.84
SSL2Q00578 RIM2YBR192W 1134 nt9.8□□□□□ -0.84
SSL2Q00578 HMG2YLR450W 3138 nt9.79□□□□□ -0.84
SSL2Q00578 YMR262WYMR262W 942 nt9.79□□□□□ -0.84
SSL2Q00578 SNX3YOR357C 489 nt9.79□□□□□ -0.84
SSL2Q00578 RPC31YNL151C 756 nt9.78□□□□□ -0.84
SSL2Q00578 TIP1YBR067C 633 nt9.78□□□□□ -0.84
SSL2Q00578 SUV3YPL029W 2214 nt9.78□□□□□ -0.84
SSL2Q00578 SFL1YOR140W 2301 nt9.77□□□□□ -0.85
SSL2Q00578 OPI3YJR073C 621 nt9.77□□□□□ -0.85
SSL2Q00578 RBG2YGR173W 1107 nt9.76□□□□□ -0.85
SSL2Q00578 TPO4YOR273C 1980 nt9.75□□□□□ -0.85
SSL2Q00578 LEU4YNL104C 1860 nt9.74□□□□□ -0.85
SSL2Q00578 YPI1YFR003C 468 nt9.74□□□□□ -0.85
SSL2Q00578 RIB7YBR153W 735 nt9.74□□□□□ -0.85
SSL2Q00578 DAK2YFL053W 1776 nt9.73□□□□□ -0.85
SSL2Q00578 ADH1YOL086C 1047 nt9.73□□□□□ -0.85
SSL2Q00578 YNR064CYNR064C 873 nt9.72□□□□□ -0.85
SSL2Q00578 ADE8YDR408C 645 nt9.71□□□□□ -0.86
SSL2Q00578 YMR265CYMR265C 1386 nt9.71□□□□□ -0.86
SSL2Q00578 NPP1YCR026C 2229 nt9.7□□□□□ -0.86
SSL2Q00578 FET5YFL041W 1869 nt9.69□□□□□ -0.86
SSL2Q00578 YJR114WYJR114W 393 nt9.69□□□□□ -0.86
SSL2Q00578 YPR126CYPR126C 309 nt9.68□□□□□ -0.86
SSL2Q00578 NPP2YEL016C 1482 nt9.66□□□□□ -0.86
SSL2Q00578 CRC1YOR100C 984 nt9.66□□□□□ -0.86
SSL2Q00578 HAP5YOR358W 729 nt9.66□□□□□ -0.86
SSL2Q00578 NBA1YOL070C 1506 nt9.63□□□□□ -0.87
SSL2Q00578 SWT21YNL187W 1074 nt9.63□□□□□ -0.87
SSL2Q00578 KEL3YPL263C 1956 nt9.63□□□□□ -0.87
SSL2Q00578 MET1YKR069W 1782 nt9.63□□□□□ -0.87
SSL2Q00578 TVP23YDR084C 600 nt9.62□□□□□ -0.87
SSL2Q00578 tE(CUC)DtE(CUC)D 72 nt9.62□□□□□ -0.87
SSL2Q00578 tE(CUC)ItE(CUC)I 72 nt9.62□□□□□ -0.87
SSL2Q00578 CCT5YJR064W 1689 nt9.59□□□□□ -0.87
SSL2Q00578 KRR1YCL059C 951 nt9.58□□□□□ -0.88
SSL2Q00578 NME1NME1 340 nt9.58□□□□□ -0.88
SSL2Q00578 SPS100YHR139C 981 nt9.57□□□□□ -0.88
SSL2Q00578 YKL053WYKL053W 375 nt9.57□□□□□ -0.88
SSL2Q00578 CTI6YPL181W 1521 nt9.56□□□□□ -0.88
SSL2Q00578 BSP1YPR171W 1731 nt9.56□□□□□ -0.88
SSL2Q00578 KGD2YDR148C 1392 nt9.56□□□□□ -0.88
SSL2Q00578 YDR467CYDR467C 327 nt9.54□□□□□ -0.88
SSL2Q00578 THI3YDL080C 1830 nt9.54□□□□□ -0.88
SSL2Q00578 ALD5YER073W 1563 nt9.54□□□□□ -0.88
SSL2Q00578 INH1YDL181W 258 nt9.52□□□□□ -0.89
SSL2Q00578 TRP2YER090W 1524 nt9.51□□□□□ -0.89
SSL2Q00578 RPN14YGL004C 1254 nt9.5□□□□□ -0.89
SSL2Q00578 GID7YCL039W 2238 nt9.5□□□□□ -0.89
SSL2Q00578 GPM1YKL152C 744 nt9.49□□□□□ -0.89
SSL2Q00578 HXK1YFR053C 1458 nt9.48□□□□□ -0.89
SSL2Q00578 MTO1YGL236C 2010 nt9.48□□□□□ -0.89
SSL2Q00578 SAN1YDR143C 1833 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)BtD(GUC)B 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)DtD(GUC)D 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)G1tD(GUC)G1 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)G2tD(GUC)G2 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)I1tD(GUC)I1 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)I2tD(GUC)I2 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)J1tD(GUC)J1 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)J2tD(GUC)J2 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)J3tD(GUC)J3 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)J4tD(GUC)J4 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)KtD(GUC)K 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)L1tD(GUC)L1 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)L2tD(GUC)L2 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)MtD(GUC)M 72 nt9.48□□□□□ -0.89
SSL2Q00578 tD(GUC)OtD(GUC)O 72 nt9.48□□□□□ -0.89
SSL2Q00578 PCP1YGR101W 1041 nt9.48□□□□□ -0.89
SSL2Q00578 ABZ2YMR289W 1125 nt9.48□□□□□ -0.89
SSL2Q00578 HXT11YOL156W 1704 nt9.48□□□□□ -0.89
SSL2Q00578 YJL195CYJL195C 702 nt9.47□□□□□ -0.89
SSL2Q00578 IML3YBR107C 738 nt9.47□□□□□ -0.89
SSL2Q00578 THI6YPL214C 1623 nt9.45□□□□□ -0.9
SSL2Q00578 THI72YOR192C 1800 nt9.45□□□□□ -0.9
SSL2Q00578 YLR072WYLR072W 2082 nt9.45□□□□□ -0.9
SSL2Q00578 YMR316C-BYMR316C-B 309 nt9.45□□□□□ -0.9
SSL2Q00578 SRM1YGL097W 1449 nt9.45□□□□□ -0.9
SSL2Q00578 AMF1YOR378W 1548 nt9.45□□□□□ -0.9
SSL2Q00578 snR31snR31 225 nt9.42□□□□□ -0.9
SSL2Q00578 URA8YJR103W 1737 nt9.42□□□□□ -0.9
SSL2Q00578 AAT1YKL106W 1356 nt9.41□□□□□ -0.9
SSL2Q00578 MEX67YPL169C 1800 nt9.41□□□□□ -0.9
SSL2Q00578 TPC1YGR096W 945 nt9.41□□□□□ -0.9
SSL2Q00578 YBL095WYBL095W 813 nt9.4□□□□□ -0.9
SSL2Q00578 YOR072WYOR072W 315 nt9.4□□□□□ -0.9
SSL2Q00578 DUR3YHL016C 2208 nt9.4□□□□□ -0.91
SSL2Q00578 MHF1YOL086W-A 273 nt9.39□□□□□ -0.91
SSL2Q00578 ESS1YJR017C 513 nt9.38□□□□□ -0.91
SSL2Q00578 HBS1YKR084C 1836 nt9.38□□□□□ -0.91
SSL2Q00578 ENO2YHR174W 1314 nt9.37□□□□□ -0.91
SSL2Q00578 NIF3YGL221C 867 nt9.37□□□□□ -0.91
SSL2Q00578 MIM1YOL026C 342 nt9.37□□□□□ -0.91
SSL2Q00578 GGA2YHR108W 1758 nt9.36□□□□□ -0.91
SSL2Q00578 NAM8YHR086W 1572 nt9.35□□□□□ -0.91
Retrieved 100 of 7,029 protein–RNA pairs in 43.6 ms