Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 snR8snR8 190 nt3.39□□□□□ -1.87
SSL2Q00578 YDR413CYDR413C 576 nt3.39□□□□□ -1.87
SSL2Q00578 YAL063C-AYAL063C-A 291 nt3.39□□□□□ -1.87
SSL2Q00578 MUB1YMR100W 1863 nt3.39□□□□□ -1.87
SSL2Q00578 YDR034C-DYDR034C-D 5313 nt3.39□□□□□ -1.87
SSL2Q00578 PMR1YGL167C 2853 nt3.38□□□□□ -1.87
SSL2Q00578 MAL33YBR297W 1407 nt3.38□□□□□ -1.87
SSL2Q00578 YCK2YNL154C 1641 nt3.38□□□□□ -1.87
SSL2Q00578 MDM1YML104C 3384 nt3.38□□□□□ -1.87
SSL2Q00578 HMRA2YCR096C 360 nt3.38□□□□□ -1.87
SSL2Q00578 snR65snR65 100 nt3.38□□□□□ -1.87
SSL2Q00578 CDC26YFR036W 375 nt3.38□□□□□ -1.87
SSL2Q00578 GTT2YLL060C 702 nt3.38□□□□□ -1.87
SSL2Q00578 ILV5YLR355C 1188 nt3.38□□□□□ -1.87
SSL2Q00578 MRPL50YNR022C 420 nt3.38□□□□□ -1.87
SSL2Q00578 YOL114CYOL114C 609 nt3.38□□□□□ -1.87
SSL2Q00578 NTC20YBR188C 423 nt3.38□□□□□ -1.87
SSL2Q00578 RNH70YGR276C 1662 nt3.38□□□□□ -1.87
SSL2Q00578 SOK1YDR006C 2706 nt3.38□□□□□ -1.87
SSL2Q00578 MSB2YGR014W 3921 nt3.38□□□□□ -1.87
SSL2Q00578 LCB4YOR171C 1875 nt3.37□□□□□ -1.87
SSL2Q00578 VPS3YDR495C 3036 nt3.37□□□□□ -1.87
SSL2Q00578 CHO2YGR157W 2610 nt3.37□□□□□ -1.87
SSL2Q00578 YDL242WYDL242W 354 nt3.37□□□□□ -1.87
SSL2Q00578 YGL165CYGL165C 579 nt3.37□□□□□ -1.87
SSL2Q00578 YAL031W-AYAL031W-A 309 nt3.37□□□□□ -1.87
SSL2Q00578 MCM22YJR135C 720 nt3.37□□□□□ -1.87
SSL2Q00578 ICY1YMR195W 384 nt3.37□□□□□ -1.87
SSL2Q00578 YOR225WYOR225W 330 nt3.37□□□□□ -1.87
SSL2Q00578 POL2YNL262W 6669 nt3.37□□□□□ -1.87
SSL2Q00578 YDR338CYDR338C 2088 nt3.37□□□□□ -1.87
SSL2Q00578 TFC4YGR047C 3078 nt3.37□□□□□ -1.87
SSL2Q00578 IOC3YFR013W 2364 nt3.37□□□□□ -1.87
SSL2Q00578 DOA4YDR069C 2781 nt3.36□□□□□ -1.87
SSL2Q00578 SRP68YPL243W 1800 nt3.36□□□□□ -1.87
SSL2Q00578 YDR090CYDR090C 933 nt3.36□□□□□ -1.87
SSL2Q00578 YER091C-AYER091C-A 222 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)DtK(UUU)D 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)G1tK(UUU)G1 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)G2tK(UUU)G2 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)KtK(UUU)K 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)LtK(UUU)L 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)OtK(UUU)O 73 nt3.36□□□□□ -1.87
SSL2Q00578 tK(UUU)PtK(UUU)P 73 nt3.36□□□□□ -1.87
SSL2Q00578 AAD16YFL057C 459 nt3.36□□□□□ -1.87
SSL2Q00578 HHF2YNL030W 312 nt3.36□□□□□ -1.87
SSL2Q00578 PEX17YNL214W 600 nt3.36□□□□□ -1.87
SSL2Q00578 YPR010C-AYPR010C-A 219 nt3.36□□□□□ -1.87
SSL2Q00578 TIF4631YGR162W 2859 nt3.36□□□□□ -1.87
SSL2Q00578 AKR1YDR264C 2295 nt3.36□□□□□ -1.87
SSL2Q00578 YAT2YER024W 2772 nt3.35□□□□□ -1.87
SSL2Q00578 MUS81YDR386W 1899 nt3.35□□□□□ -1.87
SSL2Q00578 Q0032Q0032 291 nt3.35□□□□□ -1.87
SSL2Q00578 RRT13YER066W 558 nt3.35□□□□□ -1.87
SSL2Q00578 VEL1YGL258W 621 nt3.35□□□□□ -1.87
SSL2Q00578 VOA1YGR106C 798 nt3.35□□□□□ -1.87
SSL2Q00578 PHD1YKL043W 1101 nt3.35□□□□□ -1.87
SSL2Q00578 RPL15AYLR029C 615 nt3.35□□□□□ -1.87
SSL2Q00578 VTI1YMR197C 654 nt3.35□□□□□ -1.87
SSL2Q00578 YOR385WYOR385W 873 nt3.35□□□□□ -1.87
SSL2Q00578 YPR039WYPR039W 336 nt3.35□□□□□ -1.87
SSL2Q00578 ROY1YMR258C 1662 nt3.35□□□□□ -1.87
SSL2Q00578 SRC1YML034W 2505 nt3.34□□□□□ -1.87
SSL2Q00578 ATP22YDR350C 2055 nt3.34□□□□□ -1.87
SSL2Q00578 ENA2YDR039C 3276 nt3.34□□□□□ -1.87
SSL2Q00578 ENA1YDR040C 3276 nt3.34□□□□□ -1.87
SSL2Q00578 YER038W-AYER038W-A 381 nt3.34□□□□□ -1.87
SSL2Q00578 RNR4YGR180C 1038 nt3.34□□□□□ -1.87
SSL2Q00578 YNL179CYNL179C 438 nt3.34□□□□□ -1.87
SSL2Q00578 TSC3YBR058C-A 243 nt3.34□□□□□ -1.87
SSL2Q00578 CEP3YMR168C 1827 nt3.34□□□□□ -1.87
SSL2Q00578 UTP13YLR222C 2454 nt3.34□□□□□ -1.88
SSL2Q00578 SWT1YOR166C 1377 nt3.34□□□□□ -1.88
SSL2Q00578 CWH41YGL027C 2502 nt3.34□□□□□ -1.88
SSL2Q00578 PEX5YDR244W 1839 nt3.33□□□□□ -1.88
SSL2Q00578 AI2Q0055 2565 nt3.33□□□□□ -1.88
SSL2Q00578 YEL057CYEL057C 702 nt3.33□□□□□ -1.88
SSL2Q00578 YAR029WYAR029W 225 nt3.33□□□□□ -1.88
SSL2Q00578 YLR302CYLR302C 363 nt3.33□□□□□ -1.88
SSL2Q00578 URA10YMR271C 684 nt3.33□□□□□ -1.88
SSL2Q00578 YBL065WYBL065W 345 nt3.33□□□□□ -1.88
SSL2Q00578 RIX1YHR197W 2292 nt3.33□□□□□ -1.88
SSL2Q00578 ESL1YIL151C 3357 nt3.33□□□□□ -1.88
SSL2Q00578 FRE8YLR047C 2061 nt3.32□□□□□ -1.88
SSL2Q00578 SPO71YDR104C 3738 nt3.32□□□□□ -1.88
SSL2Q00578 GCN4YEL009C 846 nt3.32□□□□□ -1.88
SSL2Q00578 YGR073CYGR073C 372 nt3.32□□□□□ -1.88
SSL2Q00578 YHR139C-AYHR139C-A 312 nt3.32□□□□□ -1.88
SSL2Q00578 YIR040CYIR040C 333 nt3.32□□□□□ -1.88
SSL2Q00578 YLR230WYLR230W 306 nt3.32□□□□□ -1.88
SSL2Q00578 RPS28BYLR264W 204 nt3.32□□□□□ -1.88
SSL2Q00578 YMR316C-AYMR316C-A 312 nt3.32□□□□□ -1.88
SSL2Q00578 YOL085W-AYOL085W-A 213 nt3.32□□□□□ -1.88
SSL2Q00578 PFY1YOR122C 381 nt3.32□□□□□ -1.88
SSL2Q00578 ATP3YBR039W 936 nt3.32□□□□□ -1.88
SSL2Q00578 FKH2YNL068C 2589 nt3.32□□□□□ -1.88
SSL2Q00578 YHR080CYHR080C 4038 nt3.31□□□□□ -1.88
SSL2Q00578 NTO1YPR031W 2247 nt3.31□□□□□ -1.88
SSL2Q00578 RTT105YER104W 627 nt3.31□□□□□ -1.88
SSL2Q00578 YGR025WYGR025W 303 nt3.31□□□□□ -1.88
Retrieved 100 of 7,029 protein–RNA pairs in 68.9 ms