Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Nkx6-1Q99MA9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.73■■□□□ 1.39
Nkx6-1Q99MA9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Nkx6-1Q99MA9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Nkx6-1Q99MA9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Nkx6-1Q99MA9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
Nkx6-1Q99MA9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Nkx6-1Q99MA9 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Nkx6-1Q99MA9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Nkx6-1Q99MA9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Nkx6-1Q99MA9 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Nkx6-1Q99MA9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
Nkx6-1Q99MA9 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nkx6-1Q99MA9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Nkx6-1Q99MA9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Nkx6-1Q99MA9 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Nkx6-1Q99MA9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx6-1Q99MA9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx6-1Q99MA9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx6-1Q99MA9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Nkx6-1Q99MA9 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Nkx6-1Q99MA9 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Nkx6-1Q99MA9 Gm11599-201ENSMUST00000118720 878 ntBASIC23.65■■□□□ 1.38
Nkx6-1Q99MA9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.65■■□□□ 1.38
Nkx6-1Q99MA9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nkx6-1Q99MA9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Nkx6-1Q99MA9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Nkx6-1Q99MA9 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Nkx6-1Q99MA9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Nkx6-1Q99MA9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC23.62■■□□□ 1.37
Nkx6-1Q99MA9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.61■■□□□ 1.37
Nkx6-1Q99MA9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Nkx6-1Q99MA9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.59■■□□□ 1.37
Nkx6-1Q99MA9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Nkx6-1Q99MA9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Nkx6-1Q99MA9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Nkx6-1Q99MA9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Nkx6-1Q99MA9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Nkx6-1Q99MA9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
Nkx6-1Q99MA9 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.57■■□□□ 1.36
Nkx6-1Q99MA9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nkx6-1Q99MA9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nkx6-1Q99MA9 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nkx6-1Q99MA9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.54■■□□□ 1.36
Nkx6-1Q99MA9 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.54■■□□□ 1.36
Nkx6-1Q99MA9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx6-1Q99MA9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx6-1Q99MA9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx6-1Q99MA9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nkx6-1Q99MA9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Nkx6-1Q99MA9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Nkx6-1Q99MA9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Nkx6-1Q99MA9 Mir6538-201ENSMUST00000183713 110 ntBASIC23.5■■□□□ 1.35
Nkx6-1Q99MA9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nkx6-1Q99MA9 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Nkx6-1Q99MA9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC23.49■■□□□ 1.35
Nkx6-1Q99MA9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nkx6-1Q99MA9 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Nkx6-1Q99MA9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC23.47■■□□□ 1.35
Nkx6-1Q99MA9 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Nkx6-1Q99MA9 Gm11175-201ENSMUST00000116172 543 ntBASIC23.46■■□□□ 1.35
Nkx6-1Q99MA9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Nkx6-1Q99MA9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Nkx6-1Q99MA9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Nkx6-1Q99MA9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Nkx6-1Q99MA9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Nkx6-1Q99MA9 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
Nkx6-1Q99MA9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Nkx6-1Q99MA9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Nkx6-1Q99MA9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Nkx6-1Q99MA9 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
Nkx6-1Q99MA9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC23.4■■□□□ 1.34
Nkx6-1Q99MA9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.4■■□□□ 1.34
Nkx6-1Q99MA9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Nkx6-1Q99MA9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
Nkx6-1Q99MA9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Nkx6-1Q99MA9 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.38■■□□□ 1.33
Nkx6-1Q99MA9 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.38■■□□□ 1.33
Nkx6-1Q99MA9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Nkx6-1Q99MA9 Cap2-205ENSMUST00000225824 1634 ntBASIC23.37■■□□□ 1.33
Nkx6-1Q99MA9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Nkx6-1Q99MA9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Nkx6-1Q99MA9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC23.36■■□□□ 1.33
Nkx6-1Q99MA9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Nkx6-1Q99MA9 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Nkx6-1Q99MA9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Nkx6-1Q99MA9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Nkx6-1Q99MA9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.33■■□□□ 1.33
Nkx6-1Q99MA9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC23.33■■□□□ 1.33
Nkx6-1Q99MA9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Nkx6-1Q99MA9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Nkx6-1Q99MA9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Nkx6-1Q99MA9 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.31■■□□□ 1.32
Nkx6-1Q99MA9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Nkx6-1Q99MA9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC23.3■■□□□ 1.32
Nkx6-1Q99MA9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Nkx6-1Q99MA9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Nkx6-1Q99MA9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Nkx6-1Q99MA9 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Nkx6-1Q99MA9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.28■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms